Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL28A1Q2UY09 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
COL28A1Q2UY09 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC19.61■□□□□ 0.73
COL28A1Q2UY09 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL28A1Q2UY09 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL28A1Q2UY09 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL28A1Q2UY09 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC19.61■□□□□ 0.73
COL28A1Q2UY09 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC19.61■□□□□ 0.73
COL28A1Q2UY09 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC19.61■□□□□ 0.73
COL28A1Q2UY09 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC19.61■□□□□ 0.73
COL28A1Q2UY09 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL28A1Q2UY09 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL28A1Q2UY09 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL28A1Q2UY09 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL28A1Q2UY09 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL28A1Q2UY09 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC19.6■□□□□ 0.73
COL28A1Q2UY09 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
COL28A1Q2UY09 WWC2-AS2-201ENST00000578387 2183 ntBASIC19.6■□□□□ 0.73
COL28A1Q2UY09 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL28A1Q2UY09 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
COL28A1Q2UY09 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL28A1Q2UY09 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL28A1Q2UY09 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
COL28A1Q2UY09 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC19.6■□□□□ 0.73
COL28A1Q2UY09 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL28A1Q2UY09 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC19.6■□□□□ 0.73
COL28A1Q2UY09 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL28A1Q2UY09 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC19.6■□□□□ 0.73
COL28A1Q2UY09 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC19.6■□□□□ 0.73
COL28A1Q2UY09 OR2A1-AS1-207ENST00000486094 819 ntBASIC19.6■□□□□ 0.73
COL28A1Q2UY09 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC19.6■□□□□ 0.73
COL28A1Q2UY09 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC19.6■□□□□ 0.73
COL28A1Q2UY09 SNX21-213ENST00000614929 587 ntTSL 5 BASIC19.6■□□□□ 0.73
COL28A1Q2UY09 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL28A1Q2UY09 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL28A1Q2UY09 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL28A1Q2UY09 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL28A1Q2UY09 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC19.6■□□□□ 0.73
COL28A1Q2UY09 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL28A1Q2UY09 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL28A1Q2UY09 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC19.59■□□□□ 0.73
COL28A1Q2UY09 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL28A1Q2UY09 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL28A1Q2UY09 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC19.59■□□□□ 0.73
COL28A1Q2UY09 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
COL28A1Q2UY09 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL28A1Q2UY09 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC19.59■□□□□ 0.73
COL28A1Q2UY09 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC19.59■□□□□ 0.73
COL28A1Q2UY09 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC19.59■□□□□ 0.73
COL28A1Q2UY09 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
COL28A1Q2UY09 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC19.59■□□□□ 0.73
COL28A1Q2UY09 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC19.59■□□□□ 0.73
COL28A1Q2UY09 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC19.59■□□□□ 0.73
COL28A1Q2UY09 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL28A1Q2UY09 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC19.59■□□□□ 0.73
COL28A1Q2UY09 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC19.59■□□□□ 0.73
COL28A1Q2UY09 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL28A1Q2UY09 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL28A1Q2UY09 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL28A1Q2UY09 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC19.58■□□□□ 0.73
COL28A1Q2UY09 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC19.58■□□□□ 0.73
COL28A1Q2UY09 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL28A1Q2UY09 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC19.58■□□□□ 0.73
COL28A1Q2UY09 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC19.58■□□□□ 0.73
COL28A1Q2UY09 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
COL28A1Q2UY09 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL28A1Q2UY09 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL28A1Q2UY09 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
COL28A1Q2UY09 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
COL28A1Q2UY09 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL28A1Q2UY09 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
COL28A1Q2UY09 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC19.58■□□□□ 0.72
COL28A1Q2UY09 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL28A1Q2UY09 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC19.58■□□□□ 0.72
COL28A1Q2UY09 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
COL28A1Q2UY09 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL28A1Q2UY09 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL28A1Q2UY09 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL28A1Q2UY09 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
COL28A1Q2UY09 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL28A1Q2UY09 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC19.58■□□□□ 0.72
COL28A1Q2UY09 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
COL28A1Q2UY09 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL28A1Q2UY09 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL28A1Q2UY09 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL28A1Q2UY09 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC19.57■□□□□ 0.72
COL28A1Q2UY09 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL28A1Q2UY09 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL28A1Q2UY09 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
COL28A1Q2UY09 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL28A1Q2UY09 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL28A1Q2UY09 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC19.57■□□□□ 0.72
COL28A1Q2UY09 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC19.57■□□□□ 0.72
COL28A1Q2UY09 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
COL28A1Q2UY09 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC19.57■□□□□ 0.72
COL28A1Q2UY09 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL28A1Q2UY09 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC19.57■□□□□ 0.72
COL28A1Q2UY09 C11orf96-202ENST00000528572 1834 ntBASIC19.57■□□□□ 0.72
COL28A1Q2UY09 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL28A1Q2UY09 FAM99A-202ENST00000538190 1989 ntBASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms