Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL7A1Q02388 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
COL7A1Q02388 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL7A1Q02388 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
COL7A1Q02388 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
COL7A1Q02388 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL7A1Q02388 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
COL7A1Q02388 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
COL7A1Q02388 C9orf163-202ENST00000624034 2573 ntBASIC14.76□□□□□ -0.05
COL7A1Q02388 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL7A1Q02388 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
COL7A1Q02388 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL7A1Q02388 AC116050.2-201ENST00000612102 1779 ntBASIC14.76□□□□□ -0.05
COL7A1Q02388 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
COL7A1Q02388 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC14.76□□□□□ -0.05
COL7A1Q02388 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL7A1Q02388 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC14.76□□□□□ -0.05
COL7A1Q02388 AC245052.3-201ENST00000450182 901 ntBASIC14.76□□□□□ -0.05
COL7A1Q02388 FDX2-207ENST00000494368 584 ntTSL 4 BASIC14.76□□□□□ -0.05
COL7A1Q02388 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC14.76□□□□□ -0.05
COL7A1Q02388 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
COL7A1Q02388 AC006011.2-201ENST00000621313 1158 ntBASIC14.76□□□□□ -0.05
COL7A1Q02388 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC14.75□□□□□ -0.05
COL7A1Q02388 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC14.75□□□□□ -0.05
COL7A1Q02388 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL7A1Q02388 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL7A1Q02388 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
COL7A1Q02388 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL7A1Q02388 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC14.75□□□□□ -0.05
COL7A1Q02388 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
COL7A1Q02388 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC14.75□□□□□ -0.05
COL7A1Q02388 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
COL7A1Q02388 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL7A1Q02388 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC14.75□□□□□ -0.05
COL7A1Q02388 AL358472.4-201ENST00000633140 710 ntBASIC14.75□□□□□ -0.05
COL7A1Q02388 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL7A1Q02388 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL7A1Q02388 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL7A1Q02388 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL7A1Q02388 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL7A1Q02388 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL7A1Q02388 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL7A1Q02388 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC14.75□□□□□ -0.05
COL7A1Q02388 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL7A1Q02388 AC073195.1-201ENST00000607241 877 ntBASIC14.75□□□□□ -0.05
COL7A1Q02388 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
COL7A1Q02388 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC14.74□□□□□ -0.05
COL7A1Q02388 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL7A1Q02388 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL7A1Q02388 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC14.74□□□□□ -0.05
COL7A1Q02388 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC14.74□□□□□ -0.05
COL7A1Q02388 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL7A1Q02388 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC14.74□□□□□ -0.05
COL7A1Q02388 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC14.74□□□□□ -0.05
COL7A1Q02388 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL7A1Q02388 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC14.74□□□□□ -0.05
COL7A1Q02388 AL353807.1-201ENST00000427475 662 ntBASIC14.74□□□□□ -0.05
COL7A1Q02388 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC14.74□□□□□ -0.05
COL7A1Q02388 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
COL7A1Q02388 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
COL7A1Q02388 CYP21A1P-202ENST00000354927 1481 ntBASIC14.74□□□□□ -0.05
COL7A1Q02388 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL7A1Q02388 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL7A1Q02388 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL7A1Q02388 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL7A1Q02388 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
COL7A1Q02388 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL7A1Q02388 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
COL7A1Q02388 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC14.74□□□□□ -0.05
COL7A1Q02388 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
COL7A1Q02388 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL7A1Q02388 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
COL7A1Q02388 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
COL7A1Q02388 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL7A1Q02388 GUK1-204ENST00000366721 689 ntTSL 3 BASIC14.73□□□□□ -0.05
COL7A1Q02388 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL7A1Q02388 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC14.73□□□□□ -0.05
COL7A1Q02388 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC14.73□□□□□ -0.05
COL7A1Q02388 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL7A1Q02388 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
COL7A1Q02388 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC14.73□□□□□ -0.05
COL7A1Q02388 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC14.73□□□□□ -0.05
COL7A1Q02388 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
COL7A1Q02388 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC14.73□□□□□ -0.05
COL7A1Q02388 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL7A1Q02388 AC087388.1-201ENST00000571370 1112 ntBASIC14.73□□□□□ -0.05
COL7A1Q02388 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
COL7A1Q02388 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
COL7A1Q02388 EXOC3-AS1-202ENST00000623673 1663 ntBASIC14.73□□□□□ -0.05
COL7A1Q02388 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL7A1Q02388 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC14.73□□□□□ -0.05
COL7A1Q02388 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
COL7A1Q02388 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC14.73□□□□□ -0.05
COL7A1Q02388 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL7A1Q02388 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
COL7A1Q02388 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL7A1Q02388 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC14.72□□□□□ -0.05
COL7A1Q02388 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC14.72□□□□□ -0.05
COL7A1Q02388 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC14.72□□□□□ -0.05
COL7A1Q02388 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms