Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PTPN9P43378 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC21.26■□□□□ 0.99
PTPN9P43378 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC21.26■□□□□ 0.99
PTPN9P43378 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
PTPN9P43378 LINC01521-201ENST00000504184 1943 ntBASIC21.26■□□□□ 0.99
PTPN9P43378 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
PTPN9P43378 AC092720.2-201ENST00000602388 1665 ntBASIC21.26■□□□□ 0.99
PTPN9P43378 MIR663A-201ENST00000385250 93 ntBASIC21.26■□□□□ 0.99
PTPN9P43378 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PTPN9P43378 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
PTPN9P43378 AC010980.2-201ENST00000587099 1412 ntBASIC21.26■□□□□ 0.99
PTPN9P43378 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
PTPN9P43378 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
PTPN9P43378 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
PTPN9P43378 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PTPN9P43378 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PTPN9P43378 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
PTPN9P43378 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
PTPN9P43378 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PTPN9P43378 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PTPN9P43378 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC21.25■□□□□ 0.99
PTPN9P43378 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC21.25■□□□□ 0.99
PTPN9P43378 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC21.25■□□□□ 0.99
PTPN9P43378 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC21.25■□□□□ 0.99
PTPN9P43378 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC21.25■□□□□ 0.99
PTPN9P43378 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
PTPN9P43378 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC21.25■□□□□ 0.99
PTPN9P43378 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PTPN9P43378 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC21.25■□□□□ 0.99
PTPN9P43378 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PTPN9P43378 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
PTPN9P43378 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
PTPN9P43378 LINC01006-201ENST00000333319 2292 ntBASIC21.25■□□□□ 0.99
PTPN9P43378 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PTPN9P43378 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC21.24■□□□□ 0.99
PTPN9P43378 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
PTPN9P43378 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
PTPN9P43378 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PTPN9P43378 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
PTPN9P43378 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
PTPN9P43378 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
PTPN9P43378 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
PTPN9P43378 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PTPN9P43378 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
PTPN9P43378 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
PTPN9P43378 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC21.24■□□□□ 0.99
PTPN9P43378 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
PTPN9P43378 AC093787.1-201ENST00000450396 207 ntBASIC21.24■□□□□ 0.99
PTPN9P43378 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC21.24■□□□□ 0.99
PTPN9P43378 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC21.24■□□□□ 0.99
PTPN9P43378 CYP2T3P-201ENST00000601990 817 ntBASIC21.24■□□□□ 0.99
PTPN9P43378 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC21.24■□□□□ 0.99
PTPN9P43378 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PTPN9P43378 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
PTPN9P43378 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC21.24■□□□□ 0.99
PTPN9P43378 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
PTPN9P43378 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
PTPN9P43378 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC21.23■□□□□ 0.99
PTPN9P43378 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PTPN9P43378 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC21.23■□□□□ 0.99
PTPN9P43378 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC21.23■□□□□ 0.99
PTPN9P43378 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC21.23■□□□□ 0.99
PTPN9P43378 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC21.23■□□□□ 0.99
PTPN9P43378 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
PTPN9P43378 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
PTPN9P43378 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC21.23■□□□□ 0.99
PTPN9P43378 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PTPN9P43378 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC21.23■□□□□ 0.99
PTPN9P43378 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
PTPN9P43378 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PTPN9P43378 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC21.23■□□□□ 0.99
PTPN9P43378 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PTPN9P43378 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC21.23■□□□□ 0.99
PTPN9P43378 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
PTPN9P43378 GCK-205ENST00000437084 1385 ntTSL 5 BASIC21.23■□□□□ 0.99
PTPN9P43378 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
PTPN9P43378 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
PTPN9P43378 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
PTPN9P43378 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
PTPN9P43378 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC21.22■□□□□ 0.99
PTPN9P43378 KRT18P68-201ENST00000392293 1000 ntBASIC21.22■□□□□ 0.99
PTPN9P43378 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PTPN9P43378 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC21.22■□□□□ 0.99
PTPN9P43378 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PTPN9P43378 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
PTPN9P43378 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PTPN9P43378 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PTPN9P43378 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
PTPN9P43378 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC21.22■□□□□ 0.99
PTPN9P43378 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
PTPN9P43378 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC21.22■□□□□ 0.99
PTPN9P43378 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC21.22■□□□□ 0.99
PTPN9P43378 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PTPN9P43378 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PTPN9P43378 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PTPN9P43378 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
PTPN9P43378 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
PTPN9P43378 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC21.21■□□□□ 0.99
PTPN9P43378 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
PTPN9P43378 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms