Protein–RNA interactions for Protein: P25336

MSH3, DNA mismatch repair protein MSH3, yeastyeast

Predictions only

Length 1,018 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
MSH3P25336 NUP82YJL061W 2142 nt3.57□□□□□ -1.84
MSH3P25336 RPS18BYML026C 441 nt3.57□□□□□ -1.84
MSH3P25336 YPL182CYPL182C 384 nt3.57□□□□□ -1.84
MSH3P25336 HTL1YCR020W-B 237 nt3.56□□□□□ -1.84
MSH3P25336 SGO1YOR073W 1773 nt3.56□□□□□ -1.84
MSH3P25336 YDL242WYDL242W 354 nt3.55□□□□□ -1.84
MSH3P25336 GPI14YJR013W 1212 nt3.55□□□□□ -1.84
MSH3P25336 HSK3YKL138C-A 210 nt3.55□□□□□ -1.84
MSH3P25336 YKR033CYKR033C 426 nt3.55□□□□□ -1.84
MSH3P25336 YOR072W-AYOR072W-A 249 nt3.55□□□□□ -1.84
MSH3P25336 ATP15YPL271W 189 nt3.55□□□□□ -1.84
MSH3P25336 YCK3YER123W 1575 nt3.55□□□□□ -1.84
MSH3P25336 BRO1YPL084W 2535 nt3.54□□□□□ -1.84
MSH3P25336 YHR080CYHR080C 4038 nt3.54□□□□□ -1.84
MSH3P25336 VPS3YDR495C 3036 nt3.54□□□□□ -1.84
MSH3P25336 RPS17BYDR447C 411 nt3.54□□□□□ -1.84
MSH3P25336 RPS24AYER074W 408 nt3.54□□□□□ -1.84
MSH3P25336 MGR1YCL044C 1254 nt3.54□□□□□ -1.84
MSH3P25336 XRN1YGL173C 4587 nt3.54□□□□□ -1.84
MSH3P25336 YDR034C-DYDR034C-D 5313 nt3.54□□□□□ -1.84
MSH3P25336 YIL066W-AYIL066W-A 444 nt3.53□□□□□ -1.84
MSH3P25336 PHD1YKL043W 1101 nt3.53□□□□□ -1.84
MSH3P25336 LCL2YLR104W 396 nt3.53□□□□□ -1.84
MSH3P25336 SWD3YBR175W 948 nt3.53□□□□□ -1.84
MSH3P25336 AIM9YER080W 1884 nt3.53□□□□□ -1.84
MSH3P25336 MYO5YMR109W 3660 nt3.52□□□□□ -1.85
MSH3P25336 MAK21YDR060W 3078 nt3.52□□□□□ -1.85
MSH3P25336 YMR307C-AYMR307C-A 195 nt3.52□□□□□ -1.85
MSH3P25336 DAD3YBR233W-A 285 nt3.52□□□□□ -1.85
MSH3P25336 snR49snR49 165 nt3.52□□□□□ -1.85
MSH3P25336 COG3YER157W 2406 nt3.52□□□□□ -1.85
MSH3P25336 ARP7YPR034W 1434 nt3.52□□□□□ -1.85
MSH3P25336 TOM70YNL121C 1854 nt3.52□□□□□ -1.85
MSH3P25336 TSC11YER093C 4293 nt3.51□□□□□ -1.85
MSH3P25336 YGL063C-AYGL063C-A 150 nt3.51□□□□□ -1.85
MSH3P25336 YJL020W-AYJL020W-A 258 nt3.51□□□□□ -1.85
MSH3P25336 PAC1YOR269W 1485 nt3.51□□□□□ -1.85
MSH3P25336 YJL181WYJL181W 1836 nt3.51□□□□□ -1.85
MSH3P25336 CDC24YAL041W 2565 nt3.5□□□□□ -1.85
MSH3P25336 snR79snR79 84 nt3.5□□□□□ -1.85
MSH3P25336 CSN9YDR179C 489 nt3.5□□□□□ -1.85
MSH3P25336 SDH2YLL041C 801 nt3.5□□□□□ -1.85
MSH3P25336 ABF2YMR072W 552 nt3.5□□□□□ -1.85
MSH3P25336 YMR122W-AYMR122W-A 255 nt3.5□□□□□ -1.85
MSH3P25336 STT4YLR305C 5703 nt3.5□□□□□ -1.85
MSH3P25336 YMR31YFR049W 372 nt3.49□□□□□ -1.85
MSH3P25336 ALG13YGL047W 609 nt3.49□□□□□ -1.85
MSH3P25336 RPS23AYGR118W 438 nt3.49□□□□□ -1.85
MSH3P25336 GYP7YDL234C 2241 nt3.48□□□□□ -1.85
MSH3P25336 ROM1YGR070W 3468 nt3.48□□□□□ -1.85
MSH3P25336 AKR1YDR264C 2295 nt3.48□□□□□ -1.85
MSH3P25336 EXO84YBR102C 2262 nt3.48□□□□□ -1.85
MSH3P25336 ISD11YER048W-A 285 nt3.48□□□□□ -1.85
MSH3P25336 tK(UUU)DtK(UUU)D 73 nt3.48□□□□□ -1.85
MSH3P25336 tK(UUU)G1tK(UUU)G1 73 nt3.48□□□□□ -1.85
MSH3P25336 tK(UUU)G2tK(UUU)G2 73 nt3.48□□□□□ -1.85
MSH3P25336 tK(UUU)KtK(UUU)K 73 nt3.48□□□□□ -1.85
MSH3P25336 tK(UUU)LtK(UUU)L 73 nt3.48□□□□□ -1.85
MSH3P25336 tK(UUU)OtK(UUU)O 73 nt3.48□□□□□ -1.85
MSH3P25336 tK(UUU)PtK(UUU)P 73 nt3.48□□□□□ -1.85
MSH3P25336 APQ12YIL040W 417 nt3.48□□□□□ -1.85
MSH3P25336 HTB2YBL002W 396 nt3.48□□□□□ -1.85
MSH3P25336 CCW14YLR390W-A 717 nt3.48□□□□□ -1.85
MSH3P25336 ECM25YJL201W 1800 nt3.48□□□□□ -1.85
MSH3P25336 MCD1YDL003W 1701 nt3.47□□□□□ -1.85
MSH3P25336 YSP2YDR326C 4317 nt3.47□□□□□ -1.85
MSH3P25336 ENA5YDR038C 3276 nt3.47□□□□□ -1.85
MSH3P25336 YEL020C-BYEL020C-B 198 nt3.47□□□□□ -1.85
MSH3P25336 FMP32YFL046W 624 nt3.47□□□□□ -1.85
MSH3P25336 YJL182CYJL182C 318 nt3.47□□□□□ -1.85
MSH3P25336 MF(ALPHA)1YPL187W 498 nt3.47□□□□□ -1.85
MSH3P25336 YCL023CYCL023C 348 nt3.47□□□□□ -1.85
MSH3P25336 FUS1YCL027W 1539 nt3.47□□□□□ -1.85
MSH3P25336 NOP4YPL043W 2058 nt3.47□□□□□ -1.85
MSH3P25336 VPS64YDR200C 1815 nt3.47□□□□□ -1.85
MSH3P25336 YDL062WYDL062W 426 nt3.46□□□□□ -1.86
MSH3P25336 YFH1YDL120W 525 nt3.46□□□□□ -1.86
MSH3P25336 YAL059C-AYAL059C-A 423 nt3.46□□□□□ -1.86
MSH3P25336 YOL160WYOL160W 342 nt3.46□□□□□ -1.86
MSH3P25336 YOR008C-AYOR008C-A 225 nt3.46□□□□□ -1.86
MSH3P25336 TRM7YBR061C 933 nt3.46□□□□□ -1.86
MSH3P25336 BNA4YBL098W 1383 nt3.46□□□□□ -1.86
MSH3P25336 YDR210W-BYDR210W-B 5313 nt3.46□□□□□ -1.86
MSH3P25336 YDR261W-BYDR261W-B 5313 nt3.46□□□□□ -1.86
MSH3P25336 YFL002W-AYFL002W-A 5313 nt3.46□□□□□ -1.86
MSH3P25336 YGR161W-BYGR161W-B 5313 nt3.46□□□□□ -1.86
MSH3P25336 YLR410W-BYLR410W-B 5313 nt3.46□□□□□ -1.86
MSH3P25336 YCL019WYCL019W 5313 nt3.46□□□□□ -1.86
MSH3P25336 SKT5YBL061C 2091 nt3.45□□□□□ -1.86
MSH3P25336 SSE1YPL106C 2082 nt3.45□□□□□ -1.86
MSH3P25336 YGL041CYGL041C 204 nt3.45□□□□□ -1.86
MSH3P25336 YOL155W-AYOL155W-A 135 nt3.45□□□□□ -1.86
MSH3P25336 RPL36BYPL249C-A 303 nt3.45□□□□□ -1.86
MSH3P25336 YPR146CYPR146C 330 nt3.45□□□□□ -1.86
MSH3P25336 POM152YMR129W 4014 nt3.45□□□□□ -1.86
MSH3P25336 BCH1YMR237W 2175 nt3.45□□□□□ -1.86
MSH3P25336 FUN30YAL019W 3396 nt3.44□□□□□ -1.86
MSH3P25336 YDR048CYDR048C 315 nt3.44□□□□□ -1.86
MSH3P25336 YER121WYER121W 345 nt3.44□□□□□ -1.86
MSH3P25336 YGL239CYGL239C 315 nt3.44□□□□□ -1.86
Retrieved 100 of 7,029 protein–RNA pairs in 31.4 ms