Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
BDNFP23560 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
BDNFP23560 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC21.57■■□□□ 1.04
BDNFP23560 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
BDNFP23560 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
BDNFP23560 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
BDNFP23560 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
BDNFP23560 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC21.56■■□□□ 1.04
BDNFP23560 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
BDNFP23560 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
BDNFP23560 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
BDNFP23560 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC21.56■■□□□ 1.04
BDNFP23560 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
BDNFP23560 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC21.56■■□□□ 1.04
BDNFP23560 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
BDNFP23560 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
BDNFP23560 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC21.56■■□□□ 1.04
BDNFP23560 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
BDNFP23560 MFF-205ENST00000354503 1085 ntTSL 2 BASIC21.56■■□□□ 1.04
BDNFP23560 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC21.56■■□□□ 1.04
BDNFP23560 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC21.56■■□□□ 1.04
BDNFP23560 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC21.56■■□□□ 1.04
BDNFP23560 C2orf69P4-201ENST00000565394 541 ntBASIC21.56■■□□□ 1.04
BDNFP23560 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
BDNFP23560 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
BDNFP23560 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
BDNFP23560 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
BDNFP23560 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC21.55■■□□□ 1.04
BDNFP23560 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
BDNFP23560 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC21.55■■□□□ 1.04
BDNFP23560 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
BDNFP23560 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC21.55■■□□□ 1.04
BDNFP23560 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC21.55■■□□□ 1.04
BDNFP23560 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
BDNFP23560 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC21.55■■□□□ 1.04
BDNFP23560 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
BDNFP23560 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
BDNFP23560 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC21.55■■□□□ 1.04
BDNFP23560 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC21.55■■□□□ 1.04
BDNFP23560 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
BDNFP23560 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
BDNFP23560 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
BDNFP23560 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC21.54■■□□□ 1.04
BDNFP23560 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
BDNFP23560 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
BDNFP23560 AC007375.3-201ENST00000600936 2314 ntBASIC21.54■■□□□ 1.04
BDNFP23560 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
BDNFP23560 GAS7-202ENST00000396115 929 ntTSL 5 BASIC21.54■■□□□ 1.04
BDNFP23560 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC21.54■■□□□ 1.04
BDNFP23560 FAM201B-201ENST00000458407 597 ntBASIC21.54■■□□□ 1.04
BDNFP23560 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
BDNFP23560 MIR2861-201ENST00000636310 90 ntBASIC21.54■■□□□ 1.04
BDNFP23560 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
BDNFP23560 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
BDNFP23560 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC21.54■■□□□ 1.04
BDNFP23560 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC21.54■■□□□ 1.04
BDNFP23560 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC21.53■■□□□ 1.04
BDNFP23560 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
BDNFP23560 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
BDNFP23560 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC21.53■■□□□ 1.04
BDNFP23560 POU5F1P3-201ENST00000428824 1078 ntBASIC21.53■■□□□ 1.04
BDNFP23560 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC21.53■■□□□ 1.04
BDNFP23560 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC21.53■■□□□ 1.04
BDNFP23560 HLA-B-256ENST00000639848 1089 ntBASIC21.53■■□□□ 1.04
BDNFP23560 ERF-202ENST00000440177 2032 ntTSL 2 BASIC21.53■■□□□ 1.04
BDNFP23560 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
BDNFP23560 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
BDNFP23560 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
BDNFP23560 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
BDNFP23560 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
BDNFP23560 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
BDNFP23560 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
BDNFP23560 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC21.52■■□□□ 1.04
BDNFP23560 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
BDNFP23560 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC21.52■■□□□ 1.04
BDNFP23560 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC21.52■■□□□ 1.04
BDNFP23560 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC21.52■■□□□ 1.04
BDNFP23560 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC21.52■■□□□ 1.04
BDNFP23560 AC060766.5-201ENST00000590539 871 ntBASIC21.52■■□□□ 1.04
BDNFP23560 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC21.52■■□□□ 1.04
BDNFP23560 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
BDNFP23560 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
BDNFP23560 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
BDNFP23560 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC21.52■■□□□ 1.03
BDNFP23560 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
BDNFP23560 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
BDNFP23560 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
BDNFP23560 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
BDNFP23560 STK25-205ENST00000405883 1904 ntTSL 2 BASIC21.51■■□□□ 1.03
BDNFP23560 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC21.51■■□□□ 1.03
BDNFP23560 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
BDNFP23560 UNC93B5-201ENST00000530315 699 ntBASIC21.51■■□□□ 1.03
BDNFP23560 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC21.51■■□□□ 1.03
BDNFP23560 TMEM191A-211ENST00000637163 1067 ntBASIC21.51■■□□□ 1.03
BDNFP23560 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
BDNFP23560 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
BDNFP23560 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
BDNFP23560 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
BDNFP23560 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
BDNFP23560 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC21.51■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 61.7 ms