Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AC092053.2-201ENST00000640557 1818 ntBASIC21.31■■□□□ 1
VCANP13611 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
VCANP13611 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
VCANP13611 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC21.31■■□□□ 1
VCANP13611 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC21.31■■□□□ 1
VCANP13611 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC21.3■■□□□ 1
VCANP13611 AL139125.2-201ENST00000623134 1869 ntBASIC21.3■■□□□ 1
VCANP13611 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
VCANP13611 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC21.3■■□□□ 1
VCANP13611 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC21.3■■□□□ 1
VCANP13611 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC21.3■■□□□ 1
VCANP13611 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC21.3■■□□□ 1
VCANP13611 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
VCANP13611 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
VCANP13611 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC21.3■■□□□ 1
VCANP13611 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
VCANP13611 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
VCANP13611 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC21.3■■□□□ 1
VCANP13611 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
VCANP13611 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC21.3■■□□□ 1
VCANP13611 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC21.3■■□□□ 1
VCANP13611 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC21.3■■□□□ 1
VCANP13611 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC21.3■■□□□ 1
VCANP13611 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC21.3■■□□□ 1
VCANP13611 LINC02084-201ENST00000606069 1096 ntBASIC21.3■■□□□ 1
VCANP13611 FAM87A-204ENST00000613235 858 ntBASIC21.3■■□□□ 1
VCANP13611 AC005332.1-201ENST00000577698 1310 ntBASIC21.3■■□□□ 1
VCANP13611 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
VCANP13611 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC21.29■■□□□ 1
VCANP13611 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC21.29■■□□□ 1
VCANP13611 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC21.29■■□□□ 1
VCANP13611 HMGN1P19-201ENST00000436976 333 ntBASIC21.29■■□□□ 1
VCANP13611 AC128688.1-201ENST00000487626 519 ntBASIC21.29■■□□□ 1
VCANP13611 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC21.29■■□□□ 1
VCANP13611 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC21.29■■□□□ 1
VCANP13611 LINC01238-205ENST00000567549 1107 ntBASIC21.29■■□□□ 1
VCANP13611 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC21.29■■□□□ 1
VCANP13611 AC139887.4-201ENST00000607877 719 ntBASIC21.29■■□□□ 1
VCANP13611 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
VCANP13611 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC21.29■■□□□ 1
VCANP13611 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
VCANP13611 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC21.29■■□□□ 1
VCANP13611 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC21.29■■□□□ 1
VCANP13611 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC21.28■■□□□ 1
VCANP13611 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
VCANP13611 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC21.28■■□□□ 1
VCANP13611 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC21.28■■□□□ 1
VCANP13611 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC21.28■■□□□ 1
VCANP13611 FAM207BP-201ENST00000447172 505 ntBASIC21.28■■□□□ 1
VCANP13611 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC21.28■■□□□ 1
VCANP13611 SLC25A1P4-201ENST00000567977 778 ntBASIC21.28■■□□□ 1
VCANP13611 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC21.28■■□□□ 1
VCANP13611 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC21.28■■□□□ 1
VCANP13611 MOK-233ENST00000524214 1539 ntTSL 2 BASIC21.28■■□□□ 1
VCANP13611 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC21.28■■□□□ 1
VCANP13611 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC21.28■■□□□ 1
VCANP13611 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC21.28■■□□□ 1
VCANP13611 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
VCANP13611 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
VCANP13611 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
VCANP13611 AC073195.1-201ENST00000607241 877 ntBASIC21.28■■□□□ 1
VCANP13611 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC21.28■■□□□ 1
VCANP13611 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
VCANP13611 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC21.27■■□□□ 1
VCANP13611 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC21.27■■□□□ 1
VCANP13611 AC117947.1-201ENST00000427448 529 ntBASIC21.27■■□□□ 1
VCANP13611 KRT17P6-201ENST00000453795 1220 ntBASIC21.27■■□□□ 1
VCANP13611 KRT16P5-201ENST00000455284 522 ntBASIC21.27■■□□□ 1
VCANP13611 AL671277.2-201ENST00000458060 996 ntBASIC21.27■■□□□ 1
VCANP13611 AC091390.4-202ENST00000476426 537 ntBASIC21.27■■□□□ 1
VCANP13611 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC21.27■■□□□ 1
VCANP13611 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
VCANP13611 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC21.27■■□□□ 1
VCANP13611 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
VCANP13611 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
VCANP13611 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC21.27■■□□□ 1
VCANP13611 AC091799.1-201ENST00000422823 811 ntBASIC21.27■■□□□ 1
VCANP13611 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
VCANP13611 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
VCANP13611 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC21.27■□□□□ 0.99
VCANP13611 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC21.27■□□□□ 0.99
VCANP13611 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
VCANP13611 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC21.26■□□□□ 0.99
VCANP13611 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC21.26■□□□□ 0.99
VCANP13611 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC21.26■□□□□ 0.99
VCANP13611 LIN28AP1-201ENST00000429574 405 ntBASIC21.26■□□□□ 0.99
VCANP13611 SERP1-205ENST00000487153 657 ntTSL 4 BASIC21.26■□□□□ 0.99
VCANP13611 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC21.26■□□□□ 0.99
VCANP13611 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
VCANP13611 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
VCANP13611 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC21.26■□□□□ 0.99
VCANP13611 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
VCANP13611 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC21.26■□□□□ 0.99
VCANP13611 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC21.26■□□□□ 0.99
VCANP13611 TSPY21P-201ENST00000433481 731 ntBASIC21.26■□□□□ 0.99
VCANP13611 TSPY23P-201ENST00000440136 739 ntBASIC21.26■□□□□ 0.99
VCANP13611 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
VCANP13611 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
VCANP13611 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
VCANP13611 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms