Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
COL4A1P02462 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC25.2■■□□□ 1.62
COL4A1P02462 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC25.2■■□□□ 1.62
COL4A1P02462 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC25.19■■□□□ 1.62
COL4A1P02462 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
COL4A1P02462 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
COL4A1P02462 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
COL4A1P02462 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
COL4A1P02462 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC25.19■■□□□ 1.62
COL4A1P02462 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
COL4A1P02462 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC25.19■■□□□ 1.62
COL4A1P02462 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC25.19■■□□□ 1.62
COL4A1P02462 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC25.19■■□□□ 1.62
COL4A1P02462 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
COL4A1P02462 THEM4-205ENST00000489410 643 ntTSL 2 BASIC25.19■■□□□ 1.62
COL4A1P02462 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
COL4A1P02462 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC25.19■■□□□ 1.62
COL4A1P02462 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
COL4A1P02462 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC25.19■■□□□ 1.62
COL4A1P02462 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC25.19■■□□□ 1.62
COL4A1P02462 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC25.19■■□□□ 1.62
COL4A1P02462 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC25.19■■□□□ 1.62
COL4A1P02462 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
COL4A1P02462 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
COL4A1P02462 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
COL4A1P02462 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
COL4A1P02462 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC25.18■■□□□ 1.62
COL4A1P02462 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
COL4A1P02462 TSPY15P-201ENST00000457163 923 ntBASIC25.18■■□□□ 1.62
COL4A1P02462 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC25.18■■□□□ 1.62
COL4A1P02462 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC25.18■■□□□ 1.62
COL4A1P02462 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC25.18■■□□□ 1.62
COL4A1P02462 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC25.18■■□□□ 1.62
COL4A1P02462 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC25.18■■□□□ 1.62
COL4A1P02462 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC25.18■■□□□ 1.62
COL4A1P02462 Z98882.1-201ENST00000622160 2253 ntBASIC25.18■■□□□ 1.62
COL4A1P02462 EP400NL-214ENST00000641289 2402 ntBASIC25.18■■□□□ 1.62
COL4A1P02462 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
COL4A1P02462 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
COL4A1P02462 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC25.17■■□□□ 1.62
COL4A1P02462 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC25.17■■□□□ 1.62
COL4A1P02462 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC25.17■■□□□ 1.62
COL4A1P02462 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC25.17■■□□□ 1.62
COL4A1P02462 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC25.17■■□□□ 1.62
COL4A1P02462 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC25.17■■□□□ 1.62
COL4A1P02462 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
COL4A1P02462 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
COL4A1P02462 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
COL4A1P02462 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
COL4A1P02462 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC25.17■■□□□ 1.62
COL4A1P02462 AL024507.2-201ENST00000606070 2574 ntBASIC25.17■■□□□ 1.62
COL4A1P02462 KRASP1-201ENST00000407852 552 ntBASIC25.17■■□□□ 1.62
COL4A1P02462 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
COL4A1P02462 AC239809.2-201ENST00000415381 517 ntBASIC25.17■■□□□ 1.62
COL4A1P02462 GXYLT1P3-201ENST00000453058 1193 ntBASIC25.17■■□□□ 1.62
COL4A1P02462 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC25.17■■□□□ 1.62
COL4A1P02462 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC25.17■■□□□ 1.62
COL4A1P02462 AC233702.5-201ENST00000584107 538 ntBASIC25.17■■□□□ 1.62
COL4A1P02462 Six3os1_6.1-201ENST00000620790 196 ntBASIC25.17■■□□□ 1.62
COL4A1P02462 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC25.17■■□□□ 1.62
COL4A1P02462 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
COL4A1P02462 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC25.16■■□□□ 1.62
COL4A1P02462 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
COL4A1P02462 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
COL4A1P02462 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC25.16■■□□□ 1.62
COL4A1P02462 AC244015.2-201ENST00000616358 1861 ntBASIC25.16■■□□□ 1.62
COL4A1P02462 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC25.16■■□□□ 1.62
COL4A1P02462 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC25.16■■□□□ 1.62
COL4A1P02462 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
COL4A1P02462 AC133561.1-201ENST00000568600 2415 ntBASIC25.16■■□□□ 1.62
COL4A1P02462 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC25.16■■□□□ 1.62
COL4A1P02462 RPS2P55-201ENST00000397318 883 ntBASIC25.16■■□□□ 1.62
COL4A1P02462 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC25.16■■□□□ 1.62
COL4A1P02462 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC25.16■■□□□ 1.62
COL4A1P02462 AC107956.1-201ENST00000494359 873 ntBASIC25.16■■□□□ 1.62
COL4A1P02462 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC25.16■■□□□ 1.62
COL4A1P02462 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC25.16■■□□□ 1.62
COL4A1P02462 AC120498.8-201ENST00000614275 531 ntBASIC25.16■■□□□ 1.62
COL4A1P02462 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
COL4A1P02462 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC25.16■■□□□ 1.62
COL4A1P02462 STK25-205ENST00000405883 1904 ntTSL 2 BASIC25.15■■□□□ 1.62
COL4A1P02462 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
COL4A1P02462 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
COL4A1P02462 MIR718-201ENST00000390190 70 ntBASIC25.15■■□□□ 1.62
COL4A1P02462 ECEL1P3-201ENST00000427961 737 ntBASIC25.15■■□□□ 1.62
COL4A1P02462 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC25.15■■□□□ 1.62
COL4A1P02462 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC25.15■■□□□ 1.62
COL4A1P02462 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC25.15■■□□□ 1.62
COL4A1P02462 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC25.15■■□□□ 1.62
COL4A1P02462 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC25.15■■□□□ 1.62
COL4A1P02462 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC25.15■■□□□ 1.62
COL4A1P02462 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC25.15■■□□□ 1.62
COL4A1P02462 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC25.14■■□□□ 1.62
COL4A1P02462 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
COL4A1P02462 RER1-204ENST00000378518 522 ntTSL 3 BASIC25.14■■□□□ 1.62
COL4A1P02462 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC25.14■■□□□ 1.62
COL4A1P02462 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC25.14■■□□□ 1.62
COL4A1P02462 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
COL4A1P02462 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
COL4A1P02462 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms