Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC20.88■□□□□ 0.93
CBX4O00257 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CBX4O00257 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC20.88■□□□□ 0.93
CBX4O00257 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CBX4O00257 ERF-202ENST00000440177 2032 ntTSL 2 BASIC20.88■□□□□ 0.93
CBX4O00257 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CBX4O00257 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC20.88■□□□□ 0.93
CBX4O00257 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.88■□□□□ 0.93
CBX4O00257 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CBX4O00257 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CBX4O00257 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CBX4O00257 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CBX4O00257 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
CBX4O00257 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CBX4O00257 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CBX4O00257 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CBX4O00257 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
CBX4O00257 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CBX4O00257 PGM5P4-201ENST00000421970 445 ntBASIC20.87■□□□□ 0.93
CBX4O00257 DUSP5P2-201ENST00000426873 1033 ntBASIC20.87■□□□□ 0.93
CBX4O00257 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC20.87■□□□□ 0.93
CBX4O00257 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC20.87■□□□□ 0.93
CBX4O00257 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC20.87■□□□□ 0.93
CBX4O00257 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC20.87■□□□□ 0.93
CBX4O00257 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CBX4O00257 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC20.87■□□□□ 0.93
CBX4O00257 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
CBX4O00257 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.87■□□□□ 0.93
CBX4O00257 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CBX4O00257 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC20.87■□□□□ 0.93
CBX4O00257 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CBX4O00257 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC20.87■□□□□ 0.93
CBX4O00257 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CBX4O00257 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CBX4O00257 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC20.86■□□□□ 0.93
CBX4O00257 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
CBX4O00257 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CBX4O00257 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
CBX4O00257 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC20.86■□□□□ 0.93
CBX4O00257 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
CBX4O00257 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC20.86■□□□□ 0.93
CBX4O00257 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC20.86■□□□□ 0.93
CBX4O00257 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC20.86■□□□□ 0.93
CBX4O00257 BET1L-207ENST00000529614 560 ntTSL 5 BASIC20.86■□□□□ 0.93
CBX4O00257 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC20.86■□□□□ 0.93
CBX4O00257 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CBX4O00257 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CBX4O00257 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CBX4O00257 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.86■□□□□ 0.93
CBX4O00257 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CBX4O00257 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CBX4O00257 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC20.85■□□□□ 0.93
CBX4O00257 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.85■□□□□ 0.93
CBX4O00257 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
CBX4O00257 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CBX4O00257 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CBX4O00257 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC20.85■□□□□ 0.93
CBX4O00257 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CBX4O00257 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC20.85■□□□□ 0.93
CBX4O00257 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
CBX4O00257 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC20.85■□□□□ 0.93
CBX4O00257 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
CBX4O00257 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CBX4O00257 FAM201B-201ENST00000458407 597 ntBASIC20.85■□□□□ 0.93
CBX4O00257 RHEB-204ENST00000472642 900 ntTSL 3 BASIC20.85■□□□□ 0.93
CBX4O00257 AC097658.1-201ENST00000475555 843 ntBASIC20.85■□□□□ 0.93
CBX4O00257 AC105020.6-201ENST00000621523 1217 ntBASIC20.85■□□□□ 0.93
CBX4O00257 TBCB-214ENST00000629269 413 ntTSL 5 BASIC20.85■□□□□ 0.93
CBX4O00257 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
CBX4O00257 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC20.85■□□□□ 0.93
CBX4O00257 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.85■□□□□ 0.93
CBX4O00257 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
CBX4O00257 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CBX4O00257 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CBX4O00257 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
CBX4O00257 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
CBX4O00257 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
CBX4O00257 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CBX4O00257 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CBX4O00257 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CBX4O00257 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.84■□□□□ 0.93
CBX4O00257 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20.84■□□□□ 0.93
CBX4O00257 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
CBX4O00257 AC006128.1-201ENST00000624704 1661 ntBASIC20.84■□□□□ 0.93
CBX4O00257 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CBX4O00257 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
CBX4O00257 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
CBX4O00257 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CBX4O00257 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
CBX4O00257 AC091874.3-201ENST00000512672 1195 ntBASIC20.84■□□□□ 0.93
CBX4O00257 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC20.84■□□□□ 0.93
CBX4O00257 AL356652.1-201ENST00000615962 565 ntBASIC20.84■□□□□ 0.93
CBX4O00257 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CBX4O00257 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.84■□□□□ 0.93
CBX4O00257 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CBX4O00257 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CBX4O00257 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CBX4O00257 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CBX4O00257 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC20.83■□□□□ 0.93
CBX4O00257 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms