Protein–RNA interactions for Protein: Q91Y21

Pcdha1, Protocadherin alpha 1, mousemouse

Predictions only

Length 948 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha1Q91Y21 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC25.6■■□□□ 1.69
Pcdha1Q91Y21 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
Pcdha1Q91Y21 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
Pcdha1Q91Y21 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
Pcdha1Q91Y21 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
Pcdha1Q91Y21 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
Pcdha1Q91Y21 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC25.55■■□□□ 1.68
Pcdha1Q91Y21 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
Pcdha1Q91Y21 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC25.54■■□□□ 1.68
Pcdha1Q91Y21 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC25.54■■□□□ 1.68
Pcdha1Q91Y21 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
Pcdha1Q91Y21 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
Pcdha1Q91Y21 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC25.51■■□□□ 1.68
Pcdha1Q91Y21 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Pcdha1Q91Y21 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
Pcdha1Q91Y21 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC25.5■■□□□ 1.67
Pcdha1Q91Y21 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
Pcdha1Q91Y21 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC25.49■■□□□ 1.67
Pcdha1Q91Y21 Nkain2-201ENSMUST00000092602 558 ntBASIC25.48■■□□□ 1.67
Pcdha1Q91Y21 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC25.48■■□□□ 1.67
Pcdha1Q91Y21 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
Pcdha1Q91Y21 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC25.47■■□□□ 1.67
Pcdha1Q91Y21 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC25.46■■□□□ 1.67
Pcdha1Q91Y21 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
Pcdha1Q91Y21 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC25.45■■□□□ 1.66
Pcdha1Q91Y21 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
Pcdha1Q91Y21 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC25.45■■□□□ 1.66
Pcdha1Q91Y21 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
Pcdha1Q91Y21 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
Pcdha1Q91Y21 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC25.43■■□□□ 1.66
Pcdha1Q91Y21 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC25.43■■□□□ 1.66
Pcdha1Q91Y21 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC25.43■■□□□ 1.66
Pcdha1Q91Y21 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC25.43■■□□□ 1.66
Pcdha1Q91Y21 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
Pcdha1Q91Y21 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
Pcdha1Q91Y21 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC25.41■■□□□ 1.66
Pcdha1Q91Y21 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC25.4■■□□□ 1.66
Pcdha1Q91Y21 Gm5987-201ENSMUST00000196433 1151 ntBASIC25.4■■□□□ 1.66
Pcdha1Q91Y21 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
Pcdha1Q91Y21 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
Pcdha1Q91Y21 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
Pcdha1Q91Y21 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC25.39■■□□□ 1.65
Pcdha1Q91Y21 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC25.38■■□□□ 1.65
Pcdha1Q91Y21 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC25.38■■□□□ 1.65
Pcdha1Q91Y21 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
Pcdha1Q91Y21 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
Pcdha1Q91Y21 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
Pcdha1Q91Y21 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
Pcdha1Q91Y21 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC25.35■■□□□ 1.65
Pcdha1Q91Y21 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
Pcdha1Q91Y21 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC25.35■■□□□ 1.65
Pcdha1Q91Y21 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
Pcdha1Q91Y21 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC25.34■■□□□ 1.65
Pcdha1Q91Y21 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
Pcdha1Q91Y21 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC25.32■■□□□ 1.64
Pcdha1Q91Y21 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
Pcdha1Q91Y21 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
Pcdha1Q91Y21 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC25.31■■□□□ 1.64
Pcdha1Q91Y21 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC25.3■■□□□ 1.64
Pcdha1Q91Y21 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
Pcdha1Q91Y21 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
Pcdha1Q91Y21 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
Pcdha1Q91Y21 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC25.29■■□□□ 1.64
Pcdha1Q91Y21 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC25.28■■□□□ 1.64
Pcdha1Q91Y21 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
Pcdha1Q91Y21 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
Pcdha1Q91Y21 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
Pcdha1Q91Y21 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
Pcdha1Q91Y21 Amer2-203ENSMUST00000225247 2662 ntBASIC25.27■■□□□ 1.64
Pcdha1Q91Y21 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
Pcdha1Q91Y21 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
Pcdha1Q91Y21 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC25.26■■□□□ 1.63
Pcdha1Q91Y21 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
Pcdha1Q91Y21 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
Pcdha1Q91Y21 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
Pcdha1Q91Y21 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC25.25■■□□□ 1.63
Pcdha1Q91Y21 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
Pcdha1Q91Y21 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
Pcdha1Q91Y21 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
Pcdha1Q91Y21 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
Pcdha1Q91Y21 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC25.22■■□□□ 1.63
Pcdha1Q91Y21 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC25.22■■□□□ 1.63
Pcdha1Q91Y21 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
Pcdha1Q91Y21 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC25.21■■□□□ 1.63
Pcdha1Q91Y21 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
Pcdha1Q91Y21 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
Pcdha1Q91Y21 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
Pcdha1Q91Y21 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
Pcdha1Q91Y21 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC25.16■■□□□ 1.62
Pcdha1Q91Y21 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC25.16■■□□□ 1.62
Pcdha1Q91Y21 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC25.16■■□□□ 1.62
Pcdha1Q91Y21 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC25.16■■□□□ 1.62
Pcdha1Q91Y21 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
Pcdha1Q91Y21 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC25.16■■□□□ 1.62
Pcdha1Q91Y21 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Pcdha1Q91Y21 Gm7432-201ENSMUST00000210343 879 ntBASIC25.12■■□□□ 1.61
Pcdha1Q91Y21 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC25.11■■□□□ 1.61
Pcdha1Q91Y21 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC25.11■■□□□ 1.61
Pcdha1Q91Y21 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
Pcdha1Q91Y21 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC25.11■■□□□ 1.61
Retrieved 100 of 76,532 protein–RNA pairs in 60 ms