Protein–RNA interactions for Protein: Q61124

Cln3, Battenin, mousemouse

Predictions only

Length 438 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cln3Q61124 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC27,52■■■□□ 2
Cln3Q61124 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC27,51■■□□□ 1,99
Cln3Q61124 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC27,5■■□□□ 1,99
Cln3Q61124 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC27,49■■□□□ 1,99
Cln3Q61124 Gm11599-201ENSMUST00000118720 878 ntBASIC27,49■■□□□ 1,99
Cln3Q61124 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC27,49■■□□□ 1,99
Cln3Q61124 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC27,48■■□□□ 1,99
Cln3Q61124 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC27,48■■□□□ 1,99
Cln3Q61124 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC27,47■■□□□ 1,99
Cln3Q61124 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC27,46■■□□□ 1,99
Cln3Q61124 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC27,46■■□□□ 1,99
Cln3Q61124 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC27,46■■□□□ 1,99
Cln3Q61124 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC27,45■■□□□ 1,99
Cln3Q61124 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC27,44■■□□□ 1,98
Cln3Q61124 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC27,43■■□□□ 1,98
Cln3Q61124 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC27,43■■□□□ 1,98
Cln3Q61124 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC27,42■■□□□ 1,98
Cln3Q61124 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC27,41■■□□□ 1,98
Cln3Q61124 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC27,41■■□□□ 1,98
Cln3Q61124 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC27,41■■□□□ 1,98
Cln3Q61124 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC27,4■■□□□ 1,98
Cln3Q61124 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC27,4■■□□□ 1,98
Cln3Q61124 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC27,4■■□□□ 1,98
Cln3Q61124 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC27,38■■□□□ 1,97
Cln3Q61124 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC27,37■■□□□ 1,97
Cln3Q61124 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC27,37■■□□□ 1,97
Cln3Q61124 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC27,37■■□□□ 1,97
Cln3Q61124 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC27,36■■□□□ 1,97
Cln3Q61124 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC27,36■■□□□ 1,97
Cln3Q61124 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC27,36■■□□□ 1,97
Cln3Q61124 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC27,34■■□□□ 1,97
Cln3Q61124 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC27,34■■□□□ 1,97
Cln3Q61124 Gm6345-201ENSMUST00000180378 1691 ntBASIC27,34■■□□□ 1,97
Cln3Q61124 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC27,34■■□□□ 1,97
Cln3Q61124 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC27,34■■□□□ 1,97
Cln3Q61124 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC27,33■■□□□ 1,97
Cln3Q61124 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC27,33■■□□□ 1,97
Cln3Q61124 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC27,33■■□□□ 1,97
Cln3Q61124 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC27,33■■□□□ 1,97
Cln3Q61124 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC27,33■■□□□ 1,97
Cln3Q61124 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC27,32■■□□□ 1,96
Cln3Q61124 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC27,31■■□□□ 1,96
Cln3Q61124 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC27,31■■□□□ 1,96
Cln3Q61124 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC27,3■■□□□ 1,96
Cln3Q61124 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC27,3■■□□□ 1,96
Cln3Q61124 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC27,3■■□□□ 1,96
Cln3Q61124 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC27,3■■□□□ 1,96
Cln3Q61124 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC27,3■■□□□ 1,96
Cln3Q61124 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC27,29■■□□□ 1,96
Cln3Q61124 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC27,28■■□□□ 1,96
Cln3Q61124 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC27,28■■□□□ 1,96
Cln3Q61124 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC27,28■■□□□ 1,96
Cln3Q61124 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC27,27■■□□□ 1,96
Cln3Q61124 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC27,26■■□□□ 1,95
Cln3Q61124 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC27,26■■□□□ 1,95
Cln3Q61124 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC27,26■■□□□ 1,95
Cln3Q61124 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC27,25■■□□□ 1,95
Cln3Q61124 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC27,24■■□□□ 1,95
Cln3Q61124 Gm11175-201ENSMUST00000116172 543 ntBASIC27,24■■□□□ 1,95
Cln3Q61124 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC27,23■■□□□ 1,95
Cln3Q61124 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC27,23■■□□□ 1,95
Cln3Q61124 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC27,23■■□□□ 1,95
Cln3Q61124 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC27,22■■□□□ 1,95
Cln3Q61124 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC27,21■■□□□ 1,95
Cln3Q61124 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC27,2■■□□□ 1,94
Cln3Q61124 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC27,19■■□□□ 1,94
Cln3Q61124 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC27,17■■□□□ 1,94
Cln3Q61124 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC27,17■■□□□ 1,94
Cln3Q61124 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC27,17■■□□□ 1,94
Cln3Q61124 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC27,16■■□□□ 1,94
Cln3Q61124 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC27,15■■□□□ 1,94
Cln3Q61124 Gm30023-201ENSMUST00000197970 889 ntBASIC27,14■■□□□ 1,94
Cln3Q61124 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC27,14■■□□□ 1,94
Cln3Q61124 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC27,14■■□□□ 1,93
Cln3Q61124 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC27,14■■□□□ 1,93
Cln3Q61124 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC27,14■■□□□ 1,93
Cln3Q61124 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC27,13■■□□□ 1,93
Cln3Q61124 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC27,13■■□□□ 1,93
Cln3Q61124 AC131739.1-201ENSMUST00000221692 1245 ntBASIC27,12■■□□□ 1,93
Cln3Q61124 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC27,12■■□□□ 1,93
Cln3Q61124 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC27,12■■□□□ 1,93
Cln3Q61124 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC27,12■■□□□ 1,93
Cln3Q61124 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC27,11■■□□□ 1,93
Cln3Q61124 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC27,11■■□□□ 1,93
Cln3Q61124 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC27,1■■□□□ 1,93
Cln3Q61124 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC27,1■■□□□ 1,93
Cln3Q61124 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC27,1■■□□□ 1,93
Cln3Q61124 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC27,09■■□□□ 1,93
Cln3Q61124 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC27,08■■□□□ 1,93
Cln3Q61124 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC27,08■■□□□ 1,93
Cln3Q61124 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC27,08■■□□□ 1,93
Cln3Q61124 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC27,08■■□□□ 1,93
Cln3Q61124 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC27,07■■□□□ 1,92
Cln3Q61124 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC27,06■■□□□ 1,92
Cln3Q61124 Mir6538-201ENSMUST00000183713 110 ntBASIC27,05■■□□□ 1,92
Cln3Q61124 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC27,05■■□□□ 1,92
Cln3Q61124 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC27,04■■□□□ 1,92
Cln3Q61124 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC27,03■■□□□ 1,92
Cln3Q61124 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC27,03■■□□□ 1,92
Cln3Q61124 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC27,03■■□□□ 1,92
Retrieved 100 of 76,532 protein–RNA pairs in 20,4 ms