Protein–RNA interactions for Protein: Q61124

Cln3, Battenin, mousemouse

Predictions only

Length 438 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cln3Q61124 Gm25239-201ENSMUST00000174915 86 ntBASIC43,92■■■■■ 4,62
Cln3Q61124 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC40,72■■■■■ 4,11
Cln3Q61124 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC40,06■■■■■ 4
Cln3Q61124 Gm24109-201ENSMUST00000175489 103 ntBASIC38,18■■■■□ 3,7
Cln3Q61124 Gm15042-201ENSMUST00000120212 883 ntBASIC38,15■■■■□ 3,7
Cln3Q61124 Gm15045-201ENSMUST00000117359 883 ntBASIC37,33■■■■□ 3,57
Cln3Q61124 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC37,07■■■■□ 3,52
Cln3Q61124 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC37,05■■■■□ 3,52
Cln3Q61124 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC36,8■■■■□ 3,48
Cln3Q61124 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC36,69■■■■□ 3,46
Cln3Q61124 Gm23366-201ENSMUST00000175022 89 ntBASIC36,59■■■■□ 3,45
Cln3Q61124 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC36,47■■■■□ 3,43
Cln3Q61124 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC36,15■■■■□ 3,38
Cln3Q61124 AC153911.1-202ENSMUST00000218534 1034 ntBASIC35,68■■■■□ 3,3
Cln3Q61124 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC35,64■■■■□ 3,3
Cln3Q61124 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC35,5■■■■□ 3,27
Cln3Q61124 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC35,42■■■■□ 3,26
Cln3Q61124 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC35,26■■■■□ 3,24
Cln3Q61124 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC35,25■■■■□ 3,23
Cln3Q61124 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC35,16■■■■□ 3,22
Cln3Q61124 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC35■■■■□ 3,19
Cln3Q61124 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC34,91■■■■□ 3,18
Cln3Q61124 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC34,9■■■■□ 3,18
Cln3Q61124 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC34,89■■■■□ 3,18
Cln3Q61124 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC34,83■■■■□ 3,17
Cln3Q61124 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC34,83■■■■□ 3,17
Cln3Q61124 Gm25238-201ENSMUST00000174914 89 ntBASIC34,77■■■■□ 3,16
Cln3Q61124 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC34,77■■■■□ 3,16
Cln3Q61124 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC34,66■■■■□ 3,14
Cln3Q61124 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC34,55■■■■□ 3,12
Cln3Q61124 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC34,51■■■■□ 3,11
Cln3Q61124 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC34,49■■■■□ 3,11
Cln3Q61124 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC34,22■■■■□ 3,07
Cln3Q61124 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC34,08■■■■□ 3,05
Cln3Q61124 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC33,99■■■■□ 3,03
Cln3Q61124 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC33,97■■■■□ 3,03
Cln3Q61124 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC33,79■■■■□ 3
Cln3Q61124 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC33,78■■■■□ 3
Cln3Q61124 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC33,72■■■□□ 2,99
Cln3Q61124 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC33,67■■■□□ 2,98
Cln3Q61124 Psd-208ENSMUST00000224556 2034 ntBASIC33,63■■■□□ 2,97
Cln3Q61124 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC33,6■■■□□ 2,97
Cln3Q61124 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC33,54■■■□□ 2,96
Cln3Q61124 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC33,47■■■□□ 2,95
Cln3Q61124 Gm27325-201ENSMUST00000175467 74 ntBASIC33,42■■■□□ 2,94
Cln3Q61124 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC33,31■■■□□ 2,92
Cln3Q61124 Gm25262-201ENSMUST00000174934 133 ntBASIC33,31■■■□□ 2,92
Cln3Q61124 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC33,29■■■□□ 2,92
Cln3Q61124 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC33,16■■■□□ 2,9
Cln3Q61124 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC33,04■■■□□ 2,88
Cln3Q61124 Rab21-202ENSMUST00000218831 843 ntBASIC32,9■■■□□ 2,86
Cln3Q61124 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC32,85■■■□□ 2,85
Cln3Q61124 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC32,83■■■□□ 2,85
Cln3Q61124 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC32,82■■■□□ 2,84
Cln3Q61124 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC32,8■■■□□ 2,84
Cln3Q61124 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC32,79■■■□□ 2,84
Cln3Q61124 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC32,78■■■□□ 2,84
Cln3Q61124 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC32,77■■■□□ 2,84
Cln3Q61124 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC32,77■■■□□ 2,84
Cln3Q61124 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC32,71■■■□□ 2,83
Cln3Q61124 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC32,71■■■□□ 2,83
Cln3Q61124 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC32,67■■■□□ 2,82
Cln3Q61124 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC32,65■■■□□ 2,82
Cln3Q61124 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC32,58■■■□□ 2,81
Cln3Q61124 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC32,58■■■□□ 2,81
Cln3Q61124 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC32,56■■■□□ 2,8
Cln3Q61124 Gm26115-201ENSMUST00000175605 87 ntBASIC32,55■■■□□ 2,8
Cln3Q61124 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC32,47■■■□□ 2,79
Cln3Q61124 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC32,42■■■□□ 2,78
Cln3Q61124 Gm8109-201ENSMUST00000194076 746 ntBASIC32,42■■■□□ 2,78
Cln3Q61124 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC32,4■■■□□ 2,78
Cln3Q61124 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC32,39■■■□□ 2,78
Cln3Q61124 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC32,37■■■□□ 2,77
Cln3Q61124 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC32,37■■■□□ 2,77
Cln3Q61124 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC32,32■■■□□ 2,76
Cln3Q61124 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC32,29■■■□□ 2,76
Cln3Q61124 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC32,29■■■□□ 2,76
Cln3Q61124 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC32,26■■■□□ 2,76
Cln3Q61124 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC32,26■■■□□ 2,75
Cln3Q61124 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC32,23■■■□□ 2,75
Cln3Q61124 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC32,16■■■□□ 2,74
Cln3Q61124 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC32,14■■■□□ 2,74
Cln3Q61124 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC32,08■■■□□ 2,73
Cln3Q61124 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC32,07■■■□□ 2,72
Cln3Q61124 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC32,03■■■□□ 2,72
Cln3Q61124 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC32■■■□□ 2,71
Cln3Q61124 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC31,98■■■□□ 2,71
Cln3Q61124 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC31,9■■■□□ 2,7
Cln3Q61124 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC31,88■■■□□ 2,69
Cln3Q61124 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC31,87■■■□□ 2,69
Cln3Q61124 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC31,85■■■□□ 2,69
Cln3Q61124 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC31,83■■■□□ 2,69
Cln3Q61124 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC31,8■■■□□ 2,68
Cln3Q61124 Gm17082-201ENSMUST00000166043 1091 ntBASIC31,79■■■□□ 2,68
Cln3Q61124 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC31,78■■■□□ 2,68
Cln3Q61124 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC31,78■■■□□ 2,68
Cln3Q61124 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC31,78■■■□□ 2,68
Cln3Q61124 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC31,73■■■□□ 2,67
Cln3Q61124 Gm10524-201ENSMUST00000181931 1893 ntBASIC31,68■■■□□ 2,66
Cln3Q61124 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC31,63■■■□□ 2,65
Retrieved 100 of 76,532 protein–RNA pairs in 10,2 ms