Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Nkx3-1P97436 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
Nkx3-1P97436 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Nkx3-1P97436 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Nkx3-1P97436 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
Nkx3-1P97436 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Nkx3-1P97436 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC21.19■□□□□ 0.98
Nkx3-1P97436 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Nkx3-1P97436 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC21.17■□□□□ 0.98
Nkx3-1P97436 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
Nkx3-1P97436 Gm11599-201ENSMUST00000118720 878 ntBASIC21.16■□□□□ 0.98
Nkx3-1P97436 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC21.15■□□□□ 0.98
Nkx3-1P97436 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC21.15■□□□□ 0.98
Nkx3-1P97436 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Nkx3-1P97436 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Nkx3-1P97436 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Nkx3-1P97436 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC21.13■□□□□ 0.97
Nkx3-1P97436 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC21.13■□□□□ 0.97
Nkx3-1P97436 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Nkx3-1P97436 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Nkx3-1P97436 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC21.12■□□□□ 0.97
Nkx3-1P97436 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Nkx3-1P97436 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
Nkx3-1P97436 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Nkx3-1P97436 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC21.11■□□□□ 0.97
Nkx3-1P97436 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Nkx3-1P97436 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC21.1■□□□□ 0.97
Nkx3-1P97436 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Nkx3-1P97436 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Nkx3-1P97436 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Nkx3-1P97436 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Nkx3-1P97436 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC21.09■□□□□ 0.97
Nkx3-1P97436 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Nkx3-1P97436 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Nkx3-1P97436 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC21.08■□□□□ 0.97
Nkx3-1P97436 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC21.08■□□□□ 0.96
Nkx3-1P97436 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Nkx3-1P97436 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Nkx3-1P97436 Gm6345-201ENSMUST00000180378 1691 ntBASIC21.06■□□□□ 0.96
Nkx3-1P97436 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Nkx3-1P97436 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC21.05■□□□□ 0.96
Nkx3-1P97436 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Nkx3-1P97436 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Nkx3-1P97436 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
Nkx3-1P97436 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC21.04■□□□□ 0.96
Nkx3-1P97436 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC21.04■□□□□ 0.96
Nkx3-1P97436 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Nkx3-1P97436 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC21.03■□□□□ 0.96
Nkx3-1P97436 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Nkx3-1P97436 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Nkx3-1P97436 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Nkx3-1P97436 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC21.02■□□□□ 0.96
Nkx3-1P97436 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
Nkx3-1P97436 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Nkx3-1P97436 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Nkx3-1P97436 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
Nkx3-1P97436 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Nkx3-1P97436 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC21■□□□□ 0.95
Nkx3-1P97436 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC20.99■□□□□ 0.95
Nkx3-1P97436 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Nkx3-1P97436 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC20.98■□□□□ 0.95
Nkx3-1P97436 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
Nkx3-1P97436 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
Nkx3-1P97436 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Nkx3-1P97436 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Nkx3-1P97436 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Nkx3-1P97436 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC20.96■□□□□ 0.95
Nkx3-1P97436 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Nkx3-1P97436 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
Nkx3-1P97436 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC20.95■□□□□ 0.94
Nkx3-1P97436 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Nkx3-1P97436 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC20.94■□□□□ 0.94
Nkx3-1P97436 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
Nkx3-1P97436 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Nkx3-1P97436 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
Nkx3-1P97436 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Nkx3-1P97436 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC20.92■□□□□ 0.94
Nkx3-1P97436 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
Nkx3-1P97436 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Nkx3-1P97436 AC131739.1-201ENSMUST00000221692 1245 ntBASIC20.9■□□□□ 0.94
Nkx3-1P97436 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Nkx3-1P97436 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC20.89■□□□□ 0.93
Nkx3-1P97436 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Nkx3-1P97436 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Nkx3-1P97436 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Nkx3-1P97436 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
Nkx3-1P97436 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Nkx3-1P97436 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Nkx3-1P97436 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Nkx3-1P97436 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Nkx3-1P97436 AC153504.1-201ENSMUST00000218379 2290 ntBASIC20.86■□□□□ 0.93
Nkx3-1P97436 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Nkx3-1P97436 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Nkx3-1P97436 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Nkx3-1P97436 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Nkx3-1P97436 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
Nkx3-1P97436 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
Nkx3-1P97436 Gm30023-201ENSMUST00000197970 889 ntBASIC20.84■□□□□ 0.93
Nkx3-1P97436 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Nkx3-1P97436 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC20.83■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 9.5 ms