Protein–RNA interactions for Protein: P54276

Msh6, DNA mismatch repair protein Msh6, mousemouse

Known RBP Predictions only

Length 1,358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh6P54276 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC31,79■■■□□ 2,68
Msh6P54276 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC31,78■■■□□ 2,68
Msh6P54276 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC31,78■■■□□ 2,68
Msh6P54276 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC31,76■■■□□ 2,67
Msh6P54276 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC31,76■■■□□ 2,67
Msh6P54276 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC31,76■■■□□ 2,67
Msh6P54276 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC31,75■■■□□ 2,67
Msh6P54276 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC31,75■■■□□ 2,67
Msh6P54276 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC31,75■■■□□ 2,67
Msh6P54276 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC31,75■■■□□ 2,67
Msh6P54276 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC31,74■■■□□ 2,67
Msh6P54276 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC31,73■■■□□ 2,67
Msh6P54276 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC31,71■■■□□ 2,67
Msh6P54276 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC31,69■■■□□ 2,66
Msh6P54276 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC31,68■■■□□ 2,66
Msh6P54276 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC31,67■■■□□ 2,66
Msh6P54276 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC31,67■■■□□ 2,66
Msh6P54276 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC31,67■■■□□ 2,66
Msh6P54276 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC31,66■■■□□ 2,66
Msh6P54276 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC31,66■■■□□ 2,66
Msh6P54276 Gm11599-201ENSMUST00000118720 878 ntBASIC31,65■■■□□ 2,66
Msh6P54276 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC31,65■■■□□ 2,66
Msh6P54276 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC31,65■■■□□ 2,66
Msh6P54276 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC31,65■■■□□ 2,66
Msh6P54276 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC31,64■■■□□ 2,66
Msh6P54276 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC31,64■■■□□ 2,66
Msh6P54276 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC31,62■■■□□ 2,65
Msh6P54276 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC31,61■■■□□ 2,65
Msh6P54276 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC31,59■■■□□ 2,65
Msh6P54276 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC31,59■■■□□ 2,65
Msh6P54276 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC31,58■■■□□ 2,65
Msh6P54276 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC31,57■■■□□ 2,64
Msh6P54276 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC31,57■■■□□ 2,64
Msh6P54276 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC31,57■■■□□ 2,64
Msh6P54276 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC31,56■■■□□ 2,64
Msh6P54276 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC31,55■■■□□ 2,64
Msh6P54276 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC31,55■■■□□ 2,64
Msh6P54276 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC31,54■■■□□ 2,64
Msh6P54276 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC31,54■■■□□ 2,64
Msh6P54276 AC153504.1-201ENSMUST00000218379 2290 ntBASIC31,53■■■□□ 2,64
Msh6P54276 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC31,52■■■□□ 2,64
Msh6P54276 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC31,52■■■□□ 2,64
Msh6P54276 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC31,51■■■□□ 2,63
Msh6P54276 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC31,51■■■□□ 2,63
Msh6P54276 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC31,5■■■□□ 2,63
Msh6P54276 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC31,49■■■□□ 2,63
Msh6P54276 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC31,49■■■□□ 2,63
Msh6P54276 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC31,49■■■□□ 2,63
Msh6P54276 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC31,49■■■□□ 2,63
Msh6P54276 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC31,49■■■□□ 2,63
Msh6P54276 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC31,48■■■□□ 2,63
Msh6P54276 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC31,46■■■□□ 2,63
Msh6P54276 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC31,46■■■□□ 2,63
Msh6P54276 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC31,46■■■□□ 2,63
Msh6P54276 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC31,45■■■□□ 2,63
Msh6P54276 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC31,43■■■□□ 2,62
Msh6P54276 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC31,43■■■□□ 2,62
Msh6P54276 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC31,43■■■□□ 2,62
Msh6P54276 Gm11175-201ENSMUST00000116172 543 ntBASIC31,43■■■□□ 2,62
Msh6P54276 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC31,42■■■□□ 2,62
Msh6P54276 Mir6538-201ENSMUST00000183713 110 ntBASIC31,41■■■□□ 2,62
Msh6P54276 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC31,4■■■□□ 2,62
Msh6P54276 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC31,4■■■□□ 2,62
Msh6P54276 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC31,39■■■□□ 2,62
Msh6P54276 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC31,39■■■□□ 2,62
Msh6P54276 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC31,39■■■□□ 2,62
Msh6P54276 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC31,39■■■□□ 2,62
Msh6P54276 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC31,38■■■□□ 2,61
Msh6P54276 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC31,38■■■□□ 2,61
Msh6P54276 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC31,38■■■□□ 2,61
Msh6P54276 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC31,38■■■□□ 2,61
Msh6P54276 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC31,36■■■□□ 2,61
Msh6P54276 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC31,36■■■□□ 2,61
Msh6P54276 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC31,35■■■□□ 2,61
Msh6P54276 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC31,34■■■□□ 2,61
Msh6P54276 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC31,34■■■□□ 2,61
Msh6P54276 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC31,34■■■□□ 2,61
Msh6P54276 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC31,34■■■□□ 2,61
Msh6P54276 Zxda-201ENSMUST00000117281 2621 ntBASIC31,32■■■□□ 2,6
Msh6P54276 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC31,31■■■□□ 2,6
Msh6P54276 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC31,3■■■□□ 2,6
Msh6P54276 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC31,3■■■□□ 2,6
Msh6P54276 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC31,29■■■□□ 2,6
Msh6P54276 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC31,28■■■□□ 2,6
Msh6P54276 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC31,27■■■□□ 2,6
Msh6P54276 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC31,27■■■□□ 2,6
Msh6P54276 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC31,27■■■□□ 2,6
Msh6P54276 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC31,27■■■□□ 2,6
Msh6P54276 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC31,27■■■□□ 2,6
Msh6P54276 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC31,27■■■□□ 2,6
Msh6P54276 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC31,27■■■□□ 2,6
Msh6P54276 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC31,26■■■□□ 2,6
Msh6P54276 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC31,26■■■□□ 2,59
Msh6P54276 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC31,25■■■□□ 2,59
Msh6P54276 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC31,24■■■□□ 2,59
Msh6P54276 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC31,23■■■□□ 2,59
Msh6P54276 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC31,22■■■□□ 2,59
Msh6P54276 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC31,21■■■□□ 2,59
Msh6P54276 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC31,21■■■□□ 2,59
Msh6P54276 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC31,21■■■□□ 2,59
Retrieved 100 of 76,532 protein–RNA pairs in 25,9 ms