Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CXCL1P09341 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CXCL1P09341 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
CXCL1P09341 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC20.43■□□□□ 0.86
CXCL1P09341 PKM-203ENST00000389093 2279 ntTSL 5 BASIC20.43■□□□□ 0.86
CXCL1P09341 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC20.43■□□□□ 0.86
CXCL1P09341 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
CXCL1P09341 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CXCL1P09341 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CXCL1P09341 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
CXCL1P09341 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
CXCL1P09341 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CXCL1P09341 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
CXCL1P09341 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CXCL1P09341 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.86
CXCL1P09341 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CXCL1P09341 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CXCL1P09341 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC20.39■□□□□ 0.85
CXCL1P09341 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CXCL1P09341 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
CXCL1P09341 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CXCL1P09341 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
CXCL1P09341 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
CXCL1P09341 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CXCL1P09341 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
CXCL1P09341 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CXCL1P09341 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CXCL1P09341 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC20.35■□□□□ 0.85
CXCL1P09341 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC20.34■□□□□ 0.85
CXCL1P09341 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CXCL1P09341 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CXCL1P09341 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CXCL1P09341 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CXCL1P09341 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
CXCL1P09341 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC20.32■□□□□ 0.84
CXCL1P09341 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
CXCL1P09341 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CXCL1P09341 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CXCL1P09341 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CXCL1P09341 AL449106.1-201ENST00000608517 1980 ntBASIC20.32■□□□□ 0.84
CXCL1P09341 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CXCL1P09341 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC20.31■□□□□ 0.84
CXCL1P09341 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CXCL1P09341 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CXCL1P09341 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CXCL1P09341 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CXCL1P09341 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
CXCL1P09341 DRD5P2-201ENST00000421395 2012 ntBASIC20.3■□□□□ 0.84
CXCL1P09341 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CXCL1P09341 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CXCL1P09341 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CXCL1P09341 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC20.29■□□□□ 0.84
CXCL1P09341 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC20.29■□□□□ 0.84
CXCL1P09341 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CXCL1P09341 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC20.27■□□□□ 0.84
CXCL1P09341 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CXCL1P09341 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CXCL1P09341 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
CXCL1P09341 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CXCL1P09341 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CXCL1P09341 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC20.26■□□□□ 0.83
CXCL1P09341 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CXCL1P09341 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CXCL1P09341 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CXCL1P09341 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CXCL1P09341 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
CXCL1P09341 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CXCL1P09341 LTK-203ENST00000453182 2412 ntTSL 2 BASIC20.22■□□□□ 0.83
CXCL1P09341 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CXCL1P09341 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CXCL1P09341 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC20.21■□□□□ 0.83
CXCL1P09341 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC20.2■□□□□ 0.83
CXCL1P09341 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC20.2■□□□□ 0.82
CXCL1P09341 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CXCL1P09341 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CXCL1P09341 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC20.19■□□□□ 0.82
CXCL1P09341 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CXCL1P09341 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
CXCL1P09341 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CXCL1P09341 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CXCL1P09341 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC20.18■□□□□ 0.82
CXCL1P09341 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC20.18■□□□□ 0.82
CXCL1P09341 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CXCL1P09341 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC20.18■□□□□ 0.82
CXCL1P09341 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CXCL1P09341 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC20.17■□□□□ 0.82
CXCL1P09341 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC20.17■□□□□ 0.82
CXCL1P09341 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CXCL1P09341 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC20.16■□□□□ 0.82
CXCL1P09341 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC20.15■□□□□ 0.82
CXCL1P09341 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CXCL1P09341 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CXCL1P09341 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CXCL1P09341 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
CXCL1P09341 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CXCL1P09341 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC20.15■□□□□ 0.82
CXCL1P09341 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC20.15■□□□□ 0.82
CXCL1P09341 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
CXCL1P09341 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC20.14■□□□□ 0.81
CXCL1P09341 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms