Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC22.1■■□□□ 1.13
Lmx1bO88609 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
Lmx1bO88609 Gm42809-201ENSMUST00000198429 1138 ntBASIC22.09■■□□□ 1.13
Lmx1bO88609 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Lmx1bO88609 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC22.06■■□□□ 1.12
Lmx1bO88609 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
Lmx1bO88609 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Lmx1bO88609 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Lmx1bO88609 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC22.03■■□□□ 1.12
Lmx1bO88609 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
Lmx1bO88609 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
Lmx1bO88609 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
Lmx1bO88609 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Lmx1bO88609 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
Lmx1bO88609 Nkain2-201ENSMUST00000092602 558 ntBASIC22.01■■□□□ 1.11
Lmx1bO88609 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC22■■□□□ 1.11
Lmx1bO88609 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC22■■□□□ 1.11
Lmx1bO88609 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC22■■□□□ 1.11
Lmx1bO88609 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Lmx1bO88609 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Lmx1bO88609 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
Lmx1bO88609 Gm6345-201ENSMUST00000180378 1691 ntBASIC21.98■■□□□ 1.11
Lmx1bO88609 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
Lmx1bO88609 Gm5987-201ENSMUST00000196433 1151 ntBASIC21.98■■□□□ 1.11
Lmx1bO88609 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Lmx1bO88609 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Lmx1bO88609 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC21.96■■□□□ 1.11
Lmx1bO88609 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC21.96■■□□□ 1.11
Lmx1bO88609 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
Lmx1bO88609 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
Lmx1bO88609 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
Lmx1bO88609 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Lmx1bO88609 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
Lmx1bO88609 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
Lmx1bO88609 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Lmx1bO88609 Amer2-203ENSMUST00000225247 2662 ntBASIC21.93■■□□□ 1.1
Lmx1bO88609 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC21.93■■□□□ 1.1
Lmx1bO88609 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Lmx1bO88609 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
Lmx1bO88609 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
Lmx1bO88609 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC21.92■■□□□ 1.1
Lmx1bO88609 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC21.92■■□□□ 1.1
Lmx1bO88609 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Lmx1bO88609 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Lmx1bO88609 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Lmx1bO88609 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Lmx1bO88609 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC21.9■■□□□ 1.1
Lmx1bO88609 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC21.9■■□□□ 1.1
Lmx1bO88609 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Lmx1bO88609 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC21.89■■□□□ 1.09
Lmx1bO88609 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
Lmx1bO88609 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Lmx1bO88609 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Lmx1bO88609 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC21.86■■□□□ 1.09
Lmx1bO88609 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Lmx1bO88609 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
Lmx1bO88609 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
Lmx1bO88609 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Lmx1bO88609 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Lmx1bO88609 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Lmx1bO88609 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Lmx1bO88609 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Lmx1bO88609 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC21.83■■□□□ 1.09
Lmx1bO88609 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Lmx1bO88609 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Lmx1bO88609 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Lmx1bO88609 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Lmx1bO88609 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Lmx1bO88609 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC21.8■■□□□ 1.08
Lmx1bO88609 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Lmx1bO88609 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Lmx1bO88609 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC21.78■■□□□ 1.08
Lmx1bO88609 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC21.78■■□□□ 1.08
Lmx1bO88609 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
Lmx1bO88609 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Lmx1bO88609 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC21.77■■□□□ 1.08
Lmx1bO88609 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC21.77■■□□□ 1.08
Lmx1bO88609 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Lmx1bO88609 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
Lmx1bO88609 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Lmx1bO88609 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Lmx1bO88609 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
Lmx1bO88609 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Lmx1bO88609 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Lmx1bO88609 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC21.75■■□□□ 1.07
Lmx1bO88609 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC21.74■■□□□ 1.07
Lmx1bO88609 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Lmx1bO88609 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
Lmx1bO88609 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC21.72■■□□□ 1.07
Lmx1bO88609 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Lmx1bO88609 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Lmx1bO88609 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Lmx1bO88609 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC21.72■■□□□ 1.07
Lmx1bO88609 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Lmx1bO88609 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Lmx1bO88609 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Lmx1bO88609 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Lmx1bO88609 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC21.7■■□□□ 1.06
Lmx1bO88609 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Lmx1bO88609 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
Retrieved 100 of 76,532 protein–RNA pairs in 59.9 ms