Protein–RNA interactions for Protein: O35393

Efnb3, Ephrin-B3, mousemouse

Predictions only

Length 340 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Efnb3O35393 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Efnb3O35393 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Efnb3O35393 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Efnb3O35393 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Efnb3O35393 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC19.07■□□□□ 0.64
Efnb3O35393 Gm24804-201ENSMUST00000174982 85 ntBASIC19.07■□□□□ 0.64
Efnb3O35393 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
Efnb3O35393 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC19.05■□□□□ 0.64
Efnb3O35393 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
Efnb3O35393 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Efnb3O35393 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Efnb3O35393 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Efnb3O35393 Peli2-204ENSMUST00000226513 1320 ntBASIC19.04■□□□□ 0.64
Efnb3O35393 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC19.04■□□□□ 0.64
Efnb3O35393 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Efnb3O35393 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Efnb3O35393 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC19.03■□□□□ 0.64
Efnb3O35393 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC19.03■□□□□ 0.64
Efnb3O35393 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Efnb3O35393 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Efnb3O35393 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Efnb3O35393 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
Efnb3O35393 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC19■□□□□ 0.63
Efnb3O35393 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
Efnb3O35393 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC18.99■□□□□ 0.63
Efnb3O35393 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
Efnb3O35393 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Efnb3O35393 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
Efnb3O35393 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Efnb3O35393 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Efnb3O35393 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC18.97■□□□□ 0.63
Efnb3O35393 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Efnb3O35393 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
Efnb3O35393 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Efnb3O35393 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Efnb3O35393 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC18.95■□□□□ 0.62
Efnb3O35393 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Efnb3O35393 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
Efnb3O35393 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Efnb3O35393 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Efnb3O35393 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Efnb3O35393 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Efnb3O35393 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Efnb3O35393 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Efnb3O35393 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC18.92■□□□□ 0.62
Efnb3O35393 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Efnb3O35393 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Efnb3O35393 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
Efnb3O35393 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Efnb3O35393 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Efnb3O35393 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Efnb3O35393 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Efnb3O35393 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Efnb3O35393 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
Efnb3O35393 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
Efnb3O35393 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Efnb3O35393 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Efnb3O35393 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Efnb3O35393 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC18.88■□□□□ 0.61
Efnb3O35393 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Efnb3O35393 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Efnb3O35393 Pcf11-205ENSMUST00000208255 1720 ntBASIC18.87■□□□□ 0.61
Efnb3O35393 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Efnb3O35393 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Efnb3O35393 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
Efnb3O35393 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Efnb3O35393 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Efnb3O35393 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC18.85■□□□□ 0.61
Efnb3O35393 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Efnb3O35393 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Efnb3O35393 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Efnb3O35393 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Efnb3O35393 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
Efnb3O35393 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Efnb3O35393 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Efnb3O35393 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
Efnb3O35393 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Efnb3O35393 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Efnb3O35393 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Efnb3O35393 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Efnb3O35393 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Efnb3O35393 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Efnb3O35393 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Efnb3O35393 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Efnb3O35393 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Efnb3O35393 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Efnb3O35393 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Efnb3O35393 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Efnb3O35393 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Efnb3O35393 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Efnb3O35393 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Efnb3O35393 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Efnb3O35393 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Efnb3O35393 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Efnb3O35393 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Efnb3O35393 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Efnb3O35393 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Efnb3O35393 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Efnb3O35393 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC18.77■□□□□ 0.6
Efnb3O35393 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC18.77■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 15.7 ms