Protein–RNA interactions for Protein: A0A0B4J274

TRAV20, T-cell receptor alpha variable 20 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV20A0A0B4J274 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
TRAV20A0A0B4J274 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
TRAV20A0A0B4J274 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC22.03■■□□□ 1.12
TRAV20A0A0B4J274 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC22.02■■□□□ 1.12
TRAV20A0A0B4J274 AC021231.2-201ENST00000594613 730 ntBASIC22.02■■□□□ 1.12
TRAV20A0A0B4J274 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
TRAV20A0A0B4J274 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
TRAV20A0A0B4J274 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
TRAV20A0A0B4J274 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
TRAV20A0A0B4J274 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
TRAV20A0A0B4J274 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC22■■□□□ 1.11
TRAV20A0A0B4J274 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
TRAV20A0A0B4J274 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
TRAV20A0A0B4J274 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
TRAV20A0A0B4J274 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC21.99■■□□□ 1.11
TRAV20A0A0B4J274 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
TRAV20A0A0B4J274 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC21.99■■□□□ 1.11
TRAV20A0A0B4J274 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
TRAV20A0A0B4J274 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC21.99■■□□□ 1.11
TRAV20A0A0B4J274 MIR6090-201ENST00000622481 60 ntBASIC21.98■■□□□ 1.11
TRAV20A0A0B4J274 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC21.98■■□□□ 1.11
TRAV20A0A0B4J274 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
TRAV20A0A0B4J274 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
TRAV20A0A0B4J274 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
TRAV20A0A0B4J274 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
TRAV20A0A0B4J274 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC21.96■■□□□ 1.11
TRAV20A0A0B4J274 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC21.96■■□□□ 1.11
TRAV20A0A0B4J274 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
TRAV20A0A0B4J274 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
TRAV20A0A0B4J274 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
TRAV20A0A0B4J274 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
TRAV20A0A0B4J274 AC120057.4-201ENST00000624722 1615 ntBASIC21.95■■□□□ 1.1
TRAV20A0A0B4J274 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
TRAV20A0A0B4J274 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
TRAV20A0A0B4J274 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC21.93■■□□□ 1.1
TRAV20A0A0B4J274 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
TRAV20A0A0B4J274 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
TRAV20A0A0B4J274 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
TRAV20A0A0B4J274 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
TRAV20A0A0B4J274 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC21.92■■□□□ 1.1
TRAV20A0A0B4J274 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC21.91■■□□□ 1.1
TRAV20A0A0B4J274 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
TRAV20A0A0B4J274 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC21.91■■□□□ 1.1
TRAV20A0A0B4J274 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
TRAV20A0A0B4J274 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
TRAV20A0A0B4J274 MACF1-219ENST00000484793 834 ntTSL 2 BASIC21.9■■□□□ 1.1
TRAV20A0A0B4J274 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
TRAV20A0A0B4J274 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.09
TRAV20A0A0B4J274 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.09
TRAV20A0A0B4J274 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.09
TRAV20A0A0B4J274 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC21.89■■□□□ 1.09
TRAV20A0A0B4J274 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.09
TRAV20A0A0B4J274 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC21.87■■□□□ 1.09
TRAV20A0A0B4J274 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
TRAV20A0A0B4J274 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
TRAV20A0A0B4J274 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
TRAV20A0A0B4J274 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC21.87■■□□□ 1.09
TRAV20A0A0B4J274 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC21.87■■□□□ 1.09
TRAV20A0A0B4J274 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
TRAV20A0A0B4J274 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
TRAV20A0A0B4J274 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC21.86■■□□□ 1.09
TRAV20A0A0B4J274 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
TRAV20A0A0B4J274 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC21.86■■□□□ 1.09
TRAV20A0A0B4J274 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC21.86■■□□□ 1.09
TRAV20A0A0B4J274 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
TRAV20A0A0B4J274 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
TRAV20A0A0B4J274 LINC01971-201ENST00000617888 1048 ntBASIC21.85■■□□□ 1.09
TRAV20A0A0B4J274 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC21.85■■□□□ 1.09
TRAV20A0A0B4J274 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TRAV20A0A0B4J274 RNF166-209ENST00000567844 633 ntTSL 5 BASIC21.84■■□□□ 1.09
TRAV20A0A0B4J274 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
TRAV20A0A0B4J274 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC21.83■■□□□ 1.09
TRAV20A0A0B4J274 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC21.83■■□□□ 1.09
TRAV20A0A0B4J274 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
TRAV20A0A0B4J274 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC21.83■■□□□ 1.09
TRAV20A0A0B4J274 AGPS-202ENST00000409888 815 ntTSL 4 BASIC21.83■■□□□ 1.09
TRAV20A0A0B4J274 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
TRAV20A0A0B4J274 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TRAV20A0A0B4J274 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
TRAV20A0A0B4J274 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TRAV20A0A0B4J274 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
TRAV20A0A0B4J274 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC21.81■■□□□ 1.08
TRAV20A0A0B4J274 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC21.81■■□□□ 1.08
TRAV20A0A0B4J274 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
TRAV20A0A0B4J274 MIR639-201ENST00000384974 98 ntBASIC21.8■■□□□ 1.08
TRAV20A0A0B4J274 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC21.8■■□□□ 1.08
TRAV20A0A0B4J274 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
TRAV20A0A0B4J274 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC21.8■■□□□ 1.08
TRAV20A0A0B4J274 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
TRAV20A0A0B4J274 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC21.79■■□□□ 1.08
TRAV20A0A0B4J274 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC21.79■■□□□ 1.08
TRAV20A0A0B4J274 DUX4L11-201ENST00000611504 1267 ntBASIC21.79■■□□□ 1.08
TRAV20A0A0B4J274 DUX4L12-201ENST00000614593 1267 ntBASIC21.79■■□□□ 1.08
TRAV20A0A0B4J274 DUX4L14-201ENST00000621227 1267 ntBASIC21.79■■□□□ 1.08
TRAV20A0A0B4J274 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
TRAV20A0A0B4J274 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
TRAV20A0A0B4J274 RPS2-202ENST00000526522 924 ntTSL 2 BASIC21.78■■□□□ 1.08
TRAV20A0A0B4J274 MIR4449-201ENST00000578365 66 ntBASIC21.78■■□□□ 1.08
TRAV20A0A0B4J274 MIR3648-2-201ENST00000581792 180 ntBASIC21.78■■□□□ 1.08
TRAV20A0A0B4J274 MIR3648-1-201ENST00000615959 180 ntBASIC21.78■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms