Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TREX1Q9NSU2 PKD1P6-201ENST00000343738 4769 ntBASIC20.46■□□□□ 0.87
TREX1Q9NSU2 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
TREX1Q9NSU2 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TREX1Q9NSU2 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TREX1Q9NSU2 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
TREX1Q9NSU2 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TREX1Q9NSU2 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
TREX1Q9NSU2 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
TREX1Q9NSU2 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
TREX1Q9NSU2 AC006015.1-201ENST00000429970 570 ntBASIC20.46■□□□□ 0.87
TREX1Q9NSU2 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
TREX1Q9NSU2 AC007322.4-201ENST00000509611 723 ntBASIC20.46■□□□□ 0.87
TREX1Q9NSU2 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC20.46■□□□□ 0.87
TREX1Q9NSU2 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
TREX1Q9NSU2 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC20.46■□□□□ 0.87
TREX1Q9NSU2 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TREX1Q9NSU2 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
TREX1Q9NSU2 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC20.46■□□□□ 0.87
TREX1Q9NSU2 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TREX1Q9NSU2 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TREX1Q9NSU2 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
TREX1Q9NSU2 KRT8P36-201ENST00000489121 1440 ntBASIC20.45■□□□□ 0.86
TREX1Q9NSU2 SLC25A24-204ENST00000569674 2357 ntBASIC20.45■□□□□ 0.86
TREX1Q9NSU2 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TREX1Q9NSU2 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.45■□□□□ 0.86
TREX1Q9NSU2 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC20.45■□□□□ 0.86
TREX1Q9NSU2 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC20.45■□□□□ 0.86
TREX1Q9NSU2 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TREX1Q9NSU2 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
TREX1Q9NSU2 ME3-201ENST00000323418 1068 ntTSL 5 BASIC20.45■□□□□ 0.86
TREX1Q9NSU2 GXYLT1P2-201ENST00000433312 1230 ntBASIC20.45■□□□□ 0.86
TREX1Q9NSU2 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
TREX1Q9NSU2 VMO1-204ENST00000441199 741 ntTSL 2 BASIC20.45■□□□□ 0.86
TREX1Q9NSU2 AL591742.1-201ENST00000604433 565 ntBASIC20.45■□□□□ 0.86
TREX1Q9NSU2 FAM21FP-204ENST00000608637 956 ntBASIC20.45■□□□□ 0.86
TREX1Q9NSU2 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TREX1Q9NSU2 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
TREX1Q9NSU2 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TREX1Q9NSU2 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
TREX1Q9NSU2 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
TREX1Q9NSU2 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC20.44■□□□□ 0.86
TREX1Q9NSU2 AL162430.1-201ENST00000480705 870 ntBASIC20.44■□□□□ 0.86
TREX1Q9NSU2 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC20.44■□□□□ 0.86
TREX1Q9NSU2 AL162412.1-201ENST00000567129 965 ntBASIC20.44■□□□□ 0.86
TREX1Q9NSU2 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC20.44■□□□□ 0.86
TREX1Q9NSU2 ANKRD20A6P-201ENST00000618763 204 ntBASIC20.44■□□□□ 0.86
TREX1Q9NSU2 AC013268.1-206ENST00000638368 961 ntBASIC20.44■□□□□ 0.86
TREX1Q9NSU2 AC112229.1-201ENST00000639295 961 ntBASIC20.44■□□□□ 0.86
TREX1Q9NSU2 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TREX1Q9NSU2 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC20.44■□□□□ 0.86
TREX1Q9NSU2 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TREX1Q9NSU2 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC20.44■□□□□ 0.86
TREX1Q9NSU2 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.44■□□□□ 0.86
TREX1Q9NSU2 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TREX1Q9NSU2 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC20.44■□□□□ 0.86
TREX1Q9NSU2 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
TREX1Q9NSU2 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
TREX1Q9NSU2 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC20.43■□□□□ 0.86
TREX1Q9NSU2 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.43■□□□□ 0.86
TREX1Q9NSU2 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
TREX1Q9NSU2 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TREX1Q9NSU2 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TREX1Q9NSU2 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TREX1Q9NSU2 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC20.43■□□□□ 0.86
TREX1Q9NSU2 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TREX1Q9NSU2 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
TREX1Q9NSU2 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
TREX1Q9NSU2 PLLP-204ENST00000569059 665 ntTSL 3 BASIC20.43■□□□□ 0.86
TREX1Q9NSU2 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TREX1Q9NSU2 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
TREX1Q9NSU2 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
TREX1Q9NSU2 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
TREX1Q9NSU2 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC20.43■□□□□ 0.86
TREX1Q9NSU2 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TREX1Q9NSU2 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
TREX1Q9NSU2 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC20.43■□□□□ 0.86
TREX1Q9NSU2 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
TREX1Q9NSU2 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
TREX1Q9NSU2 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.43■□□□□ 0.86
TREX1Q9NSU2 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
TREX1Q9NSU2 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC20.43■□□□□ 0.86
TREX1Q9NSU2 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
TREX1Q9NSU2 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TREX1Q9NSU2 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
TREX1Q9NSU2 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC20.43■□□□□ 0.86
TREX1Q9NSU2 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TREX1Q9NSU2 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.42■□□□□ 0.86
TREX1Q9NSU2 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC20.42■□□□□ 0.86
TREX1Q9NSU2 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC20.42■□□□□ 0.86
TREX1Q9NSU2 CNN2P6-201ENST00000439038 900 ntBASIC20.42■□□□□ 0.86
TREX1Q9NSU2 CASP6-205ENST00000505486 538 ntTSL 4 BASIC20.42■□□□□ 0.86
TREX1Q9NSU2 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC20.42■□□□□ 0.86
TREX1Q9NSU2 MIR5787-201ENST00000611784 55 ntBASIC20.42■□□□□ 0.86
TREX1Q9NSU2 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
TREX1Q9NSU2 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
TREX1Q9NSU2 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC20.42■□□□□ 0.86
TREX1Q9NSU2 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.42■□□□□ 0.86
TREX1Q9NSU2 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TREX1Q9NSU2 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms