Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LMX1AQ8TE12 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LMX1AQ8TE12 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LMX1AQ8TE12 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
LMX1AQ8TE12 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC19.99■□□□□ 0.79
LMX1AQ8TE12 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
LMX1AQ8TE12 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC19.99■□□□□ 0.79
LMX1AQ8TE12 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
LMX1AQ8TE12 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LMX1AQ8TE12 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC19.99■□□□□ 0.79
LMX1AQ8TE12 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
LMX1AQ8TE12 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC19.99■□□□□ 0.79
LMX1AQ8TE12 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
LMX1AQ8TE12 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
LMX1AQ8TE12 AL596275.1-201ENST00000423464 877 ntBASIC19.99■□□□□ 0.79
LMX1AQ8TE12 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC19.99■□□□□ 0.79
LMX1AQ8TE12 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC19.99■□□□□ 0.79
LMX1AQ8TE12 RNF121-214ENST00000533380 870 ntTSL 3 BASIC19.99■□□□□ 0.79
LMX1AQ8TE12 RN7SL471P-201ENST00000580476 299 ntBASIC19.99■□□□□ 0.79
LMX1AQ8TE12 BRWD1-AS2-201ENST00000603064 1028 ntBASIC19.99■□□□□ 0.79
LMX1AQ8TE12 AC069544.1-201ENST00000609399 999 ntBASIC19.99■□□□□ 0.79
LMX1AQ8TE12 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
LMX1AQ8TE12 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LMX1AQ8TE12 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
LMX1AQ8TE12 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
LMX1AQ8TE12 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
LMX1AQ8TE12 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
LMX1AQ8TE12 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC19.99■□□□□ 0.79
LMX1AQ8TE12 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LMX1AQ8TE12 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LMX1AQ8TE12 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
LMX1AQ8TE12 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC19.98■□□□□ 0.79
LMX1AQ8TE12 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LMX1AQ8TE12 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
LMX1AQ8TE12 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC19.98■□□□□ 0.79
LMX1AQ8TE12 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
LMX1AQ8TE12 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC19.98■□□□□ 0.79
LMX1AQ8TE12 POM121L13P-201ENST00000422362 380 ntBASIC19.98■□□□□ 0.79
LMX1AQ8TE12 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC19.98■□□□□ 0.79
LMX1AQ8TE12 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
LMX1AQ8TE12 AC008550.1-201ENST00000511500 884 ntBASIC19.98■□□□□ 0.79
LMX1AQ8TE12 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
LMX1AQ8TE12 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC19.98■□□□□ 0.79
LMX1AQ8TE12 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC19.98■□□□□ 0.79
LMX1AQ8TE12 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC19.98■□□□□ 0.79
LMX1AQ8TE12 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
LMX1AQ8TE12 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LMX1AQ8TE12 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
LMX1AQ8TE12 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
LMX1AQ8TE12 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
LMX1AQ8TE12 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LMX1AQ8TE12 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LMX1AQ8TE12 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LMX1AQ8TE12 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
LMX1AQ8TE12 GGT1-206ENST00000404223 952 ntTSL 2 BASIC19.97■□□□□ 0.79
LMX1AQ8TE12 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
LMX1AQ8TE12 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
LMX1AQ8TE12 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC19.97■□□□□ 0.79
LMX1AQ8TE12 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC19.97■□□□□ 0.79
LMX1AQ8TE12 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC19.97■□□□□ 0.79
LMX1AQ8TE12 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC19.97■□□□□ 0.79
LMX1AQ8TE12 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC19.97■□□□□ 0.79
LMX1AQ8TE12 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC19.97■□□□□ 0.79
LMX1AQ8TE12 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LMX1AQ8TE12 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LMX1AQ8TE12 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
LMX1AQ8TE12 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC19.97■□□□□ 0.79
LMX1AQ8TE12 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC19.97■□□□□ 0.79
LMX1AQ8TE12 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
LMX1AQ8TE12 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LMX1AQ8TE12 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
LMX1AQ8TE12 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC19.96■□□□□ 0.79
LMX1AQ8TE12 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
LMX1AQ8TE12 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC19.96■□□□□ 0.79
LMX1AQ8TE12 SERP1-205ENST00000487153 657 ntTSL 4 BASIC19.96■□□□□ 0.79
LMX1AQ8TE12 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
LMX1AQ8TE12 SPIB-206ENST00000596074 847 ntTSL 2 BASIC19.96■□□□□ 0.79
LMX1AQ8TE12 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC19.96■□□□□ 0.79
LMX1AQ8TE12 MYB-221ENST00000527615 2381 ntTSL 5 BASIC19.96■□□□□ 0.79
LMX1AQ8TE12 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
LMX1AQ8TE12 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC19.96■□□□□ 0.79
LMX1AQ8TE12 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC19.96■□□□□ 0.79
LMX1AQ8TE12 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
LMX1AQ8TE12 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC19.96■□□□□ 0.79
LMX1AQ8TE12 AC244015.2-201ENST00000616358 1861 ntBASIC19.96■□□□□ 0.79
LMX1AQ8TE12 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
LMX1AQ8TE12 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LMX1AQ8TE12 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
LMX1AQ8TE12 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC19.96■□□□□ 0.79
LMX1AQ8TE12 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LMX1AQ8TE12 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC19.95■□□□□ 0.78
LMX1AQ8TE12 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC19.95■□□□□ 0.78
LMX1AQ8TE12 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC19.95■□□□□ 0.78
LMX1AQ8TE12 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LMX1AQ8TE12 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LMX1AQ8TE12 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC19.95■□□□□ 0.78
LMX1AQ8TE12 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LMX1AQ8TE12 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC19.95■□□□□ 0.78
LMX1AQ8TE12 AC006557.6-201ENST00000623071 864 ntBASIC19.95■□□□□ 0.78
LMX1AQ8TE12 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC19.95■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms