Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PKNOX1P55347 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC20.03■□□□□ 0.8
PKNOX1P55347 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PKNOX1P55347 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PKNOX1P55347 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
PKNOX1P55347 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PKNOX1P55347 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
PKNOX1P55347 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
PKNOX1P55347 AC112907.3-201ENST00000577781 2400 ntBASIC20.03■□□□□ 0.8
PKNOX1P55347 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PKNOX1P55347 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PKNOX1P55347 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.8
PKNOX1P55347 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC20.02■□□□□ 0.8
PKNOX1P55347 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
PKNOX1P55347 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC20.02■□□□□ 0.8
PKNOX1P55347 AC005837.3-201ENST00000612163 286 ntBASIC20.02■□□□□ 0.8
PKNOX1P55347 AC120498.10-201ENST00000621827 505 ntBASIC20.02■□□□□ 0.8
PKNOX1P55347 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PKNOX1P55347 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC20.02■□□□□ 0.8
PKNOX1P55347 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PKNOX1P55347 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
PKNOX1P55347 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC20.02■□□□□ 0.8
PKNOX1P55347 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
PKNOX1P55347 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.02■□□□□ 0.8
PKNOX1P55347 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PKNOX1P55347 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PKNOX1P55347 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
PKNOX1P55347 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
PKNOX1P55347 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC20.02■□□□□ 0.79
PKNOX1P55347 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
PKNOX1P55347 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
PKNOX1P55347 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PKNOX1P55347 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PKNOX1P55347 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
PKNOX1P55347 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC20.01■□□□□ 0.79
PKNOX1P55347 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC20.01■□□□□ 0.79
PKNOX1P55347 STAC-204ENST00000457375 1366 ntTSL 2 BASIC20.01■□□□□ 0.79
PKNOX1P55347 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PKNOX1P55347 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
PKNOX1P55347 AC245052.3-201ENST00000450182 901 ntBASIC20.01■□□□□ 0.79
PKNOX1P55347 AC105265.2-201ENST00000467189 838 ntBASIC20.01■□□□□ 0.79
PKNOX1P55347 RARRES2P11-201ENST00000635158 484 ntBASIC20.01■□□□□ 0.79
PKNOX1P55347 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PKNOX1P55347 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PKNOX1P55347 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
PKNOX1P55347 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
PKNOX1P55347 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC20■□□□□ 0.79
PKNOX1P55347 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
PKNOX1P55347 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC20■□□□□ 0.79
PKNOX1P55347 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PKNOX1P55347 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PKNOX1P55347 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC20■□□□□ 0.79
PKNOX1P55347 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC20■□□□□ 0.79
PKNOX1P55347 AC010141.2-201ENST00000452426 721 ntBASIC20■□□□□ 0.79
PKNOX1P55347 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC20■□□□□ 0.79
PKNOX1P55347 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC20■□□□□ 0.79
PKNOX1P55347 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC20■□□□□ 0.79
PKNOX1P55347 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC20■□□□□ 0.79
PKNOX1P55347 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PKNOX1P55347 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
PKNOX1P55347 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC20■□□□□ 0.79
PKNOX1P55347 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC20■□□□□ 0.79
PKNOX1P55347 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
PKNOX1P55347 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PKNOX1P55347 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
PKNOX1P55347 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
PKNOX1P55347 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC19.99■□□□□ 0.79
PKNOX1P55347 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.99■□□□□ 0.79
PKNOX1P55347 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC19.99■□□□□ 0.79
PKNOX1P55347 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
PKNOX1P55347 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PKNOX1P55347 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
PKNOX1P55347 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PKNOX1P55347 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
PKNOX1P55347 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PKNOX1P55347 AC087289.5-201ENST00000586076 3175 ntBASIC19.99■□□□□ 0.79
PKNOX1P55347 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
PKNOX1P55347 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PKNOX1P55347 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
PKNOX1P55347 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
PKNOX1P55347 LINC02228-203ENST00000641970 1355 ntBASIC19.98■□□□□ 0.79
PKNOX1P55347 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
PKNOX1P55347 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
PKNOX1P55347 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC19.98■□□□□ 0.79
PKNOX1P55347 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC19.98■□□□□ 0.79
PKNOX1P55347 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC19.98■□□□□ 0.79
PKNOX1P55347 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
PKNOX1P55347 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC19.98■□□□□ 0.79
PKNOX1P55347 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
PKNOX1P55347 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC19.98■□□□□ 0.79
PKNOX1P55347 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
PKNOX1P55347 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.97■□□□□ 0.79
PKNOX1P55347 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC19.97■□□□□ 0.79
PKNOX1P55347 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PKNOX1P55347 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
PKNOX1P55347 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
PKNOX1P55347 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
PKNOX1P55347 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
PKNOX1P55347 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PKNOX1P55347 AK1-201ENST00000223836 736 ntTSL 3 BASIC19.97■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms