Protein–RNA interactions for Protein: P43681

CHRNA4, Neuronal acetylcholine receptor subunit alpha-4, humanhuman

Predictions only

Length 627 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4P43681 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHRNA4P43681 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHRNA4P43681 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CHRNA4P43681 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC20.66■□□□□ 0.9
CHRNA4P43681 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC20.66■□□□□ 0.9
CHRNA4P43681 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHRNA4P43681 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
CHRNA4P43681 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHRNA4P43681 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHRNA4P43681 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC20.66■□□□□ 0.9
CHRNA4P43681 SAPCD2P1-201ENST00000395413 1184 ntBASIC20.66■□□□□ 0.9
CHRNA4P43681 AC080038.1-201ENST00000611274 1154 ntBASIC20.66■□□□□ 0.9
CHRNA4P43681 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHRNA4P43681 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CHRNA4P43681 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC20.66■□□□□ 0.9
CHRNA4P43681 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHRNA4P43681 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC20.66■□□□□ 0.9
CHRNA4P43681 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHRNA4P43681 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHRNA4P43681 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CHRNA4P43681 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHRNA4P43681 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHRNA4P43681 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC20.65■□□□□ 0.9
CHRNA4P43681 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC20.65■□□□□ 0.9
CHRNA4P43681 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHRNA4P43681 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC20.65■□□□□ 0.9
CHRNA4P43681 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
CHRNA4P43681 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHRNA4P43681 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC20.65■□□□□ 0.9
CHRNA4P43681 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
CHRNA4P43681 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC20.65■□□□□ 0.9
CHRNA4P43681 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC20.65■□□□□ 0.9
CHRNA4P43681 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CHRNA4P43681 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC20.65■□□□□ 0.9
CHRNA4P43681 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
CHRNA4P43681 MIR2861-201ENST00000636310 90 ntBASIC20.65■□□□□ 0.9
CHRNA4P43681 AC073111.5-205ENST00000641717 521 ntBASIC20.65■□□□□ 0.9
CHRNA4P43681 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHRNA4P43681 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHRNA4P43681 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHRNA4P43681 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHRNA4P43681 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CHRNA4P43681 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CHRNA4P43681 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC20.64■□□□□ 0.9
CHRNA4P43681 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CHRNA4P43681 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CHRNA4P43681 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC20.64■□□□□ 0.89
CHRNA4P43681 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CHRNA4P43681 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
CHRNA4P43681 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CHRNA4P43681 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
CHRNA4P43681 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CHRNA4P43681 CASP6-205ENST00000505486 538 ntTSL 4 BASIC20.64■□□□□ 0.89
CHRNA4P43681 DLX3-202ENST00000512495 834 ntTSL 2 BASIC20.64■□□□□ 0.89
CHRNA4P43681 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC20.64■□□□□ 0.89
CHRNA4P43681 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CHRNA4P43681 FAM21FP-204ENST00000608637 956 ntBASIC20.64■□□□□ 0.89
CHRNA4P43681 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CHRNA4P43681 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CHRNA4P43681 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CHRNA4P43681 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CHRNA4P43681 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CHRNA4P43681 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CHRNA4P43681 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
CHRNA4P43681 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
CHRNA4P43681 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
CHRNA4P43681 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHRNA4P43681 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
CHRNA4P43681 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC20.63■□□□□ 0.89
CHRNA4P43681 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHRNA4P43681 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHRNA4P43681 AC007322.1-201ENST00000426983 750 ntBASIC20.63■□□□□ 0.89
CHRNA4P43681 APTR-203ENST00000430801 583 ntTSL 5 BASIC20.63■□□□□ 0.89
CHRNA4P43681 CYP2T1P-201ENST00000432607 1285 ntBASIC20.63■□□□□ 0.89
CHRNA4P43681 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHRNA4P43681 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
CHRNA4P43681 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CHRNA4P43681 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
CHRNA4P43681 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
CHRNA4P43681 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CHRNA4P43681 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC20.63■□□□□ 0.89
CHRNA4P43681 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHRNA4P43681 LINC01521-201ENST00000504184 1943 ntBASIC20.63■□□□□ 0.89
CHRNA4P43681 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHRNA4P43681 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHRNA4P43681 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHRNA4P43681 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC20.62■□□□□ 0.89
CHRNA4P43681 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.62■□□□□ 0.89
CHRNA4P43681 CDCA4P2-201ENST00000441182 718 ntBASIC20.62■□□□□ 0.89
CHRNA4P43681 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC20.62■□□□□ 0.89
CHRNA4P43681 AC231657.2-201ENST00000624556 255 ntBASIC20.62■□□□□ 0.89
CHRNA4P43681 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHRNA4P43681 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
CHRNA4P43681 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC20.62■□□□□ 0.89
CHRNA4P43681 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC20.62■□□□□ 0.89
CHRNA4P43681 AC073130.3-201ENST00000624389 2278 ntBASIC20.62■□□□□ 0.89
CHRNA4P43681 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC20.62■□□□□ 0.89
CHRNA4P43681 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC20.62■□□□□ 0.89
CHRNA4P43681 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
CHRNA4P43681 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms