Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
UBFD1O14562 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
UBFD1O14562 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
UBFD1O14562 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
UBFD1O14562 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
UBFD1O14562 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
UBFD1O14562 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
UBFD1O14562 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
UBFD1O14562 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC19.86■□□□□ 0.77
UBFD1O14562 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
UBFD1O14562 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
UBFD1O14562 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
UBFD1O14562 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
UBFD1O14562 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
UBFD1O14562 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
UBFD1O14562 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
UBFD1O14562 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.86■□□□□ 0.77
UBFD1O14562 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC19.86■□□□□ 0.77
UBFD1O14562 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC19.86■□□□□ 0.77
UBFD1O14562 TERF1P2-201ENST00000583350 1212 ntBASIC19.86■□□□□ 0.77
UBFD1O14562 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC19.86■□□□□ 0.77
UBFD1O14562 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
UBFD1O14562 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
UBFD1O14562 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
UBFD1O14562 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
UBFD1O14562 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC19.85■□□□□ 0.77
UBFD1O14562 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC19.85■□□□□ 0.77
UBFD1O14562 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC19.85■□□□□ 0.77
UBFD1O14562 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
UBFD1O14562 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
UBFD1O14562 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
UBFD1O14562 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
UBFD1O14562 AK1-201ENST00000223836 736 ntTSL 3 BASIC19.85■□□□□ 0.77
UBFD1O14562 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC19.85■□□□□ 0.77
UBFD1O14562 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
UBFD1O14562 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC19.85■□□□□ 0.77
UBFD1O14562 MIR638-201ENST00000385237 100 ntBASIC19.85■□□□□ 0.77
UBFD1O14562 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
UBFD1O14562 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC19.85■□□□□ 0.77
UBFD1O14562 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
UBFD1O14562 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
UBFD1O14562 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
UBFD1O14562 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
UBFD1O14562 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC19.84■□□□□ 0.77
UBFD1O14562 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
UBFD1O14562 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
UBFD1O14562 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC19.84■□□□□ 0.77
UBFD1O14562 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
UBFD1O14562 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC19.84■□□□□ 0.77
UBFD1O14562 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC19.84■□□□□ 0.77
UBFD1O14562 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC19.84■□□□□ 0.77
UBFD1O14562 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
UBFD1O14562 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
UBFD1O14562 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
UBFD1O14562 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
UBFD1O14562 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC19.84■□□□□ 0.77
UBFD1O14562 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
UBFD1O14562 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC19.84■□□□□ 0.77
UBFD1O14562 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
UBFD1O14562 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
UBFD1O14562 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
UBFD1O14562 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
UBFD1O14562 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
UBFD1O14562 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.83■□□□□ 0.77
UBFD1O14562 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
UBFD1O14562 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC19.83■□□□□ 0.77
UBFD1O14562 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
UBFD1O14562 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
UBFD1O14562 AC123595.1-201ENST00000440769 1046 ntBASIC19.83■□□□□ 0.77
UBFD1O14562 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC19.83■□□□□ 0.77
UBFD1O14562 FGF8-207ENST00000618991 856 ntTSL 3 BASIC19.83■□□□□ 0.77
UBFD1O14562 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
UBFD1O14562 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC19.83■□□□□ 0.76
UBFD1O14562 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC19.83■□□□□ 0.76
UBFD1O14562 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC19.83■□□□□ 0.76
UBFD1O14562 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
UBFD1O14562 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.76
UBFD1O14562 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
UBFD1O14562 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.83■□□□□ 0.76
UBFD1O14562 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
UBFD1O14562 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
UBFD1O14562 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
UBFD1O14562 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
UBFD1O14562 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
UBFD1O14562 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
UBFD1O14562 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
UBFD1O14562 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
UBFD1O14562 AC091799.1-201ENST00000422823 811 ntBASIC19.82■□□□□ 0.76
UBFD1O14562 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
UBFD1O14562 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC19.82■□□□□ 0.76
UBFD1O14562 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC19.82■□□□□ 0.76
UBFD1O14562 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC19.82■□□□□ 0.76
UBFD1O14562 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC19.82■□□□□ 0.76
UBFD1O14562 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
UBFD1O14562 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.82■□□□□ 0.76
UBFD1O14562 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.82■□□□□ 0.76
UBFD1O14562 AC004854.2-201ENST00000608450 1441 ntBASIC19.82■□□□□ 0.76
UBFD1O14562 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.82■□□□□ 0.76
UBFD1O14562 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
UBFD1O14562 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms