Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
BEST3Q8N1M1 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
BEST3Q8N1M1 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
BEST3Q8N1M1 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
BEST3Q8N1M1 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC19.03■□□□□ 0.64
BEST3Q8N1M1 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
BEST3Q8N1M1 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
BEST3Q8N1M1 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
BEST3Q8N1M1 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
BEST3Q8N1M1 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC19.02■□□□□ 0.64
BEST3Q8N1M1 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
BEST3Q8N1M1 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
BEST3Q8N1M1 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
BEST3Q8N1M1 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
BEST3Q8N1M1 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
BEST3Q8N1M1 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
BEST3Q8N1M1 POU5F1P3-201ENST00000428824 1078 ntBASIC19.02■□□□□ 0.64
BEST3Q8N1M1 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC19.02■□□□□ 0.64
BEST3Q8N1M1 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
BEST3Q8N1M1 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC19.02■□□□□ 0.63
BEST3Q8N1M1 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
BEST3Q8N1M1 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
BEST3Q8N1M1 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.63
BEST3Q8N1M1 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
BEST3Q8N1M1 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
BEST3Q8N1M1 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
BEST3Q8N1M1 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC19.01■□□□□ 0.63
BEST3Q8N1M1 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
BEST3Q8N1M1 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
BEST3Q8N1M1 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC19.01■□□□□ 0.63
BEST3Q8N1M1 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
BEST3Q8N1M1 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
BEST3Q8N1M1 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC19.01■□□□□ 0.63
BEST3Q8N1M1 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC19.01■□□□□ 0.63
BEST3Q8N1M1 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
BEST3Q8N1M1 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC19.01■□□□□ 0.63
BEST3Q8N1M1 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
BEST3Q8N1M1 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC19.01■□□□□ 0.63
BEST3Q8N1M1 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC19.01■□□□□ 0.63
BEST3Q8N1M1 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC19.01■□□□□ 0.63
BEST3Q8N1M1 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
BEST3Q8N1M1 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
BEST3Q8N1M1 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC19.01■□□□□ 0.63
BEST3Q8N1M1 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
BEST3Q8N1M1 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC19.01■□□□□ 0.63
BEST3Q8N1M1 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
BEST3Q8N1M1 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
BEST3Q8N1M1 MYB-221ENST00000527615 2381 ntTSL 5 BASIC19■□□□□ 0.63
BEST3Q8N1M1 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC19■□□□□ 0.63
BEST3Q8N1M1 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
BEST3Q8N1M1 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
BEST3Q8N1M1 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
BEST3Q8N1M1 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC19■□□□□ 0.63
BEST3Q8N1M1 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC19■□□□□ 0.63
BEST3Q8N1M1 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC19■□□□□ 0.63
BEST3Q8N1M1 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC19■□□□□ 0.63
BEST3Q8N1M1 AL589743.5-201ENST00000616611 1050 ntBASIC19■□□□□ 0.63
BEST3Q8N1M1 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
BEST3Q8N1M1 AC116050.2-201ENST00000612102 1779 ntBASIC19■□□□□ 0.63
BEST3Q8N1M1 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC19■□□□□ 0.63
BEST3Q8N1M1 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC19■□□□□ 0.63
BEST3Q8N1M1 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
BEST3Q8N1M1 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC19■□□□□ 0.63
BEST3Q8N1M1 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
BEST3Q8N1M1 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
BEST3Q8N1M1 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
BEST3Q8N1M1 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
BEST3Q8N1M1 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
BEST3Q8N1M1 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
BEST3Q8N1M1 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
BEST3Q8N1M1 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
BEST3Q8N1M1 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
BEST3Q8N1M1 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
BEST3Q8N1M1 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
BEST3Q8N1M1 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC18.99■□□□□ 0.63
BEST3Q8N1M1 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC18.99■□□□□ 0.63
BEST3Q8N1M1 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
BEST3Q8N1M1 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
BEST3Q8N1M1 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
BEST3Q8N1M1 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
BEST3Q8N1M1 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC18.99■□□□□ 0.63
BEST3Q8N1M1 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC18.99■□□□□ 0.63
BEST3Q8N1M1 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC18.99■□□□□ 0.63
BEST3Q8N1M1 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
BEST3Q8N1M1 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
BEST3Q8N1M1 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC18.98■□□□□ 0.63
BEST3Q8N1M1 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
BEST3Q8N1M1 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
BEST3Q8N1M1 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
BEST3Q8N1M1 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
BEST3Q8N1M1 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
BEST3Q8N1M1 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
BEST3Q8N1M1 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC18.98■□□□□ 0.63
BEST3Q8N1M1 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
BEST3Q8N1M1 KRT18P68-201ENST00000392293 1000 ntBASIC18.98■□□□□ 0.63
BEST3Q8N1M1 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
BEST3Q8N1M1 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC18.98■□□□□ 0.63
BEST3Q8N1M1 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC18.98■□□□□ 0.63
BEST3Q8N1M1 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC18.98■□□□□ 0.63
BEST3Q8N1M1 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC18.98■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms