Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC22.22■■□□□ 1.15
VPS52Q8N1B4 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
VPS52Q8N1B4 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
VPS52Q8N1B4 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
VPS52Q8N1B4 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC22.22■■□□□ 1.15
VPS52Q8N1B4 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
VPS52Q8N1B4 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
VPS52Q8N1B4 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC22.21■■□□□ 1.15
VPS52Q8N1B4 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC22.21■■□□□ 1.15
VPS52Q8N1B4 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC22.21■■□□□ 1.15
VPS52Q8N1B4 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
VPS52Q8N1B4 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
VPS52Q8N1B4 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
VPS52Q8N1B4 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC22.21■■□□□ 1.15
VPS52Q8N1B4 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC22.21■■□□□ 1.15
VPS52Q8N1B4 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC22.21■■□□□ 1.15
VPS52Q8N1B4 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC22.21■■□□□ 1.15
VPS52Q8N1B4 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC22.21■■□□□ 1.15
VPS52Q8N1B4 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
VPS52Q8N1B4 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC22.21■■□□□ 1.15
VPS52Q8N1B4 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC22.21■■□□□ 1.15
VPS52Q8N1B4 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC22.21■■□□□ 1.15
VPS52Q8N1B4 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
VPS52Q8N1B4 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
VPS52Q8N1B4 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
VPS52Q8N1B4 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.15
VPS52Q8N1B4 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC22.2■■□□□ 1.14
VPS52Q8N1B4 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC22.2■■□□□ 1.14
VPS52Q8N1B4 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
VPS52Q8N1B4 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC22.2■■□□□ 1.14
VPS52Q8N1B4 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
VPS52Q8N1B4 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
VPS52Q8N1B4 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC22.2■■□□□ 1.14
VPS52Q8N1B4 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.14
VPS52Q8N1B4 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
VPS52Q8N1B4 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC22.2■■□□□ 1.14
VPS52Q8N1B4 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC22.2■■□□□ 1.14
VPS52Q8N1B4 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC22.2■■□□□ 1.14
VPS52Q8N1B4 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
VPS52Q8N1B4 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC22.2■■□□□ 1.14
VPS52Q8N1B4 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC22.2■■□□□ 1.14
VPS52Q8N1B4 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC22.19■■□□□ 1.14
VPS52Q8N1B4 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
VPS52Q8N1B4 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC22.19■■□□□ 1.14
VPS52Q8N1B4 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC22.19■■□□□ 1.14
VPS52Q8N1B4 MCRIP2P1-201ENST00000394346 511 ntBASIC22.19■■□□□ 1.14
VPS52Q8N1B4 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC22.19■■□□□ 1.14
VPS52Q8N1B4 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC22.19■■□□□ 1.14
VPS52Q8N1B4 AL589743.5-201ENST00000616611 1050 ntBASIC22.19■■□□□ 1.14
VPS52Q8N1B4 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
VPS52Q8N1B4 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
VPS52Q8N1B4 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
VPS52Q8N1B4 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC22.19■■□□□ 1.14
VPS52Q8N1B4 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC22.19■■□□□ 1.14
VPS52Q8N1B4 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
VPS52Q8N1B4 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
VPS52Q8N1B4 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC22.18■■□□□ 1.14
VPS52Q8N1B4 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC22.18■■□□□ 1.14
VPS52Q8N1B4 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
VPS52Q8N1B4 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
VPS52Q8N1B4 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
VPS52Q8N1B4 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
VPS52Q8N1B4 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
VPS52Q8N1B4 VMO1-204ENST00000441199 741 ntTSL 2 BASIC22.18■■□□□ 1.14
VPS52Q8N1B4 ARL16-209ENST00000573715 763 ntTSL 3 BASIC22.18■■□□□ 1.14
VPS52Q8N1B4 ARL16-211ENST00000576135 694 ntTSL 3 BASIC22.18■■□□□ 1.14
VPS52Q8N1B4 AC060766.5-201ENST00000590539 871 ntBASIC22.18■■□□□ 1.14
VPS52Q8N1B4 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC22.18■■□□□ 1.14
VPS52Q8N1B4 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC22.18■■□□□ 1.14
VPS52Q8N1B4 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC22.18■■□□□ 1.14
VPS52Q8N1B4 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC22.17■■□□□ 1.14
VPS52Q8N1B4 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
VPS52Q8N1B4 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC22.17■■□□□ 1.14
VPS52Q8N1B4 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC22.17■■□□□ 1.14
VPS52Q8N1B4 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC22.17■■□□□ 1.14
VPS52Q8N1B4 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC22.17■■□□□ 1.14
VPS52Q8N1B4 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
VPS52Q8N1B4 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
VPS52Q8N1B4 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
VPS52Q8N1B4 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC22.17■■□□□ 1.14
VPS52Q8N1B4 RPS2P4-201ENST00000476944 856 ntBASIC22.17■■□□□ 1.14
VPS52Q8N1B4 UNC93B4-201ENST00000505679 747 ntBASIC22.17■■□□□ 1.14
VPS52Q8N1B4 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
VPS52Q8N1B4 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
VPS52Q8N1B4 HLA-B-256ENST00000639848 1089 ntBASIC22.17■■□□□ 1.14
VPS52Q8N1B4 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC22.17■■□□□ 1.14
VPS52Q8N1B4 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
VPS52Q8N1B4 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
VPS52Q8N1B4 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC22.17■■□□□ 1.14
VPS52Q8N1B4 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
VPS52Q8N1B4 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
VPS52Q8N1B4 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
VPS52Q8N1B4 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
VPS52Q8N1B4 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
VPS52Q8N1B4 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
VPS52Q8N1B4 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC22.16■■□□□ 1.14
VPS52Q8N1B4 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC22.16■■□□□ 1.14
VPS52Q8N1B4 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC22.16■■□□□ 1.14
VPS52Q8N1B4 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
VPS52Q8N1B4 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms