Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
PRKNO60260 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PRKNO60260 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
PRKNO60260 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC19.1■□□□□ 0.65
PRKNO60260 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
PRKNO60260 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
PRKNO60260 SAPCD2P1-201ENST00000395413 1184 ntBASIC19.1■□□□□ 0.65
PRKNO60260 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC19.1■□□□□ 0.65
PRKNO60260 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC19.1■□□□□ 0.65
PRKNO60260 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC19.1■□□□□ 0.65
PRKNO60260 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
PRKNO60260 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC19.1■□□□□ 0.65
PRKNO60260 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PRKNO60260 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PRKNO60260 AC121338.2-201ENST00000622535 1744 ntBASIC19.1■□□□□ 0.65
PRKNO60260 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
PRKNO60260 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
PRKNO60260 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PRKNO60260 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
PRKNO60260 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
PRKNO60260 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
PRKNO60260 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
PRKNO60260 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC19.09■□□□□ 0.65
PRKNO60260 BX276092.2-201ENST00000417668 665 ntBASIC19.09■□□□□ 0.65
PRKNO60260 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PRKNO60260 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
PRKNO60260 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
PRKNO60260 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
PRKNO60260 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
PRKNO60260 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
PRKNO60260 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
PRKNO60260 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
PRKNO60260 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PRKNO60260 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PRKNO60260 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
PRKNO60260 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
PRKNO60260 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
PRKNO60260 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC19.08■□□□□ 0.64
PRKNO60260 APTR-205ENST00000447009 902 ntTSL 2 BASIC19.08■□□□□ 0.64
PRKNO60260 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC19.08■□□□□ 0.64
PRKNO60260 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
PRKNO60260 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC19.08■□□□□ 0.64
PRKNO60260 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
PRKNO60260 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
PRKNO60260 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
PRKNO60260 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
PRKNO60260 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
PRKNO60260 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
PRKNO60260 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
PRKNO60260 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
PRKNO60260 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC19.07■□□□□ 0.64
PRKNO60260 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
PRKNO60260 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PRKNO60260 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PRKNO60260 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
PRKNO60260 KRT17P1-201ENST00000399211 1546 ntBASIC19.07■□□□□ 0.64
PRKNO60260 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC19.07■□□□□ 0.64
PRKNO60260 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC19.07■□□□□ 0.64
PRKNO60260 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
PRKNO60260 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PRKNO60260 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
PRKNO60260 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC19.07■□□□□ 0.64
PRKNO60260 KLF13-207ENST00000560473 489 ntTSL 3 BASIC19.07■□□□□ 0.64
PRKNO60260 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC19.07■□□□□ 0.64
PRKNO60260 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC19.07■□□□□ 0.64
PRKNO60260 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
PRKNO60260 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PRKNO60260 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PRKNO60260 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PRKNO60260 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
PRKNO60260 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
PRKNO60260 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PRKNO60260 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC19.06■□□□□ 0.64
PRKNO60260 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC19.06■□□□□ 0.64
PRKNO60260 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
PRKNO60260 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC19.06■□□□□ 0.64
PRKNO60260 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
PRKNO60260 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
PRKNO60260 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC19.06■□□□□ 0.64
PRKNO60260 ISCU-212ENST00000547005 795 ntTSL 3 BASIC19.06■□□□□ 0.64
PRKNO60260 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC19.06■□□□□ 0.64
PRKNO60260 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC19.06■□□□□ 0.64
PRKNO60260 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
PRKNO60260 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC19.06■□□□□ 0.64
PRKNO60260 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
PRKNO60260 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
PRKNO60260 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC19.06■□□□□ 0.64
PRKNO60260 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
PRKNO60260 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
PRKNO60260 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PRKNO60260 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
PRKNO60260 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC19.05■□□□□ 0.64
PRKNO60260 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PRKNO60260 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC19.05■□□□□ 0.64
PRKNO60260 AC011484.1-201ENST00000377652 1995 ntBASIC19.05■□□□□ 0.64
PRKNO60260 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PRKNO60260 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC19.05■□□□□ 0.64
PRKNO60260 AC069152.1-201ENST00000438030 544 ntBASIC19.05■□□□□ 0.64
PRKNO60260 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC19.05■□□□□ 0.64
PRKNO60260 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC19.05■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 76.5 ms