Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SSX4O60224 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
SSX4O60224 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SSX4O60224 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SSX4O60224 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SSX4O60224 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SSX4O60224 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
SSX4O60224 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC18.52■□□□□ 0.56
SSX4O60224 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC18.52■□□□□ 0.56
SSX4O60224 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SSX4O60224 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC18.52■□□□□ 0.56
SSX4O60224 GALNS-213ENST00000569433 723 ntTSL 3 BASIC18.52■□□□□ 0.56
SSX4O60224 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC18.52■□□□□ 0.56
SSX4O60224 AC087239.1-201ENST00000622671 572 ntBASIC18.52■□□□□ 0.56
SSX4O60224 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
SSX4O60224 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC18.52■□□□□ 0.56
SSX4O60224 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
SSX4O60224 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC18.52■□□□□ 0.56
SSX4O60224 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC18.52■□□□□ 0.56
SSX4O60224 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SSX4O60224 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SSX4O60224 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.55
SSX4O60224 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC18.52■□□□□ 0.55
SSX4O60224 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.55
SSX4O60224 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SSX4O60224 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC18.52■□□□□ 0.55
SSX4O60224 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
SSX4O60224 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
SSX4O60224 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC18.52■□□□□ 0.55
SSX4O60224 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SSX4O60224 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SSX4O60224 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC18.51■□□□□ 0.55
SSX4O60224 AC098818.2-201ENST00000564925 2320 ntBASIC18.51■□□□□ 0.55
SSX4O60224 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
SSX4O60224 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SSX4O60224 AC026471.1-201ENST00000564629 3026 ntBASIC18.51■□□□□ 0.55
SSX4O60224 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SSX4O60224 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SSX4O60224 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC18.51■□□□□ 0.55
SSX4O60224 COX20-201ENST00000366528 568 ntTSL 2 BASIC18.51■□□□□ 0.55
SSX4O60224 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC18.51■□□□□ 0.55
SSX4O60224 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC18.51■□□□□ 0.55
SSX4O60224 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SSX4O60224 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC18.51■□□□□ 0.55
SSX4O60224 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC18.51■□□□□ 0.55
SSX4O60224 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC18.51■□□□□ 0.55
SSX4O60224 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC18.51■□□□□ 0.55
SSX4O60224 AC137761.2-201ENST00000561729 223 ntBASIC18.51■□□□□ 0.55
SSX4O60224 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC18.51■□□□□ 0.55
SSX4O60224 AC145350.3-201ENST00000569033 163 ntBASIC18.51■□□□□ 0.55
SSX4O60224 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC18.51■□□□□ 0.55
SSX4O60224 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC18.51■□□□□ 0.55
SSX4O60224 AC068587.7-201ENST00000641602 218 ntBASIC18.51■□□□□ 0.55
SSX4O60224 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SSX4O60224 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SSX4O60224 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SSX4O60224 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
SSX4O60224 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
SSX4O60224 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
SSX4O60224 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC18.51■□□□□ 0.55
SSX4O60224 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC18.51■□□□□ 0.55
SSX4O60224 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SSX4O60224 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SSX4O60224 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
SSX4O60224 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC18.51■□□□□ 0.55
SSX4O60224 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
SSX4O60224 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
SSX4O60224 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SSX4O60224 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC18.5■□□□□ 0.55
SSX4O60224 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC18.5■□□□□ 0.55
SSX4O60224 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SSX4O60224 BID-204ENST00000399767 2129 ntTSL 2 BASIC18.5■□□□□ 0.55
SSX4O60224 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SSX4O60224 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SSX4O60224 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
SSX4O60224 EI24-211ENST00000534546 1544 ntTSL 2 BASIC18.5■□□□□ 0.55
SSX4O60224 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC18.5■□□□□ 0.55
SSX4O60224 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC18.5■□□□□ 0.55
SSX4O60224 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC18.5■□□□□ 0.55
SSX4O60224 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SSX4O60224 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC18.5■□□□□ 0.55
SSX4O60224 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SSX4O60224 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SSX4O60224 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SSX4O60224 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SSX4O60224 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SSX4O60224 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SSX4O60224 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
SSX4O60224 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
SSX4O60224 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SSX4O60224 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
SSX4O60224 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC18.5■□□□□ 0.55
SSX4O60224 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SSX4O60224 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SSX4O60224 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SSX4O60224 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SSX4O60224 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC18.49■□□□□ 0.55
SSX4O60224 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC18.49■□□□□ 0.55
SSX4O60224 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
SSX4O60224 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms