Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
MSH5O43196 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC27.52■■■□□ 2
MSH5O43196 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC27.52■■■□□ 2
MSH5O43196 AC006058.3-201ENST00000606217 1069 ntBASIC27.52■■■□□ 2
MSH5O43196 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC27.52■■■□□ 2
MSH5O43196 SRSF5-205ENST00000553635 1412 ntTSL 2 BASIC27.51■■□□□ 1.99
MSH5O43196 AC068338.2-201ENST00000563278 1430 ntBASIC27.51■■□□□ 1.99
MSH5O43196 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC27.51■■□□□ 1.99
MSH5O43196 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC27.51■■□□□ 1.99
MSH5O43196 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC27.51■■□□□ 1.99
MSH5O43196 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC27.51■■□□□ 1.99
MSH5O43196 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
MSH5O43196 TERF1P5-201ENST00000477545 1207 ntBASIC27.51■■□□□ 1.99
MSH5O43196 RNF139-AS1-202ENST00000519861 359 ntTSL 3 BASIC27.51■■□□□ 1.99
MSH5O43196 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC27.51■■□□□ 1.99
MSH5O43196 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC27.51■■□□□ 1.99
MSH5O43196 AC004777.1-201ENST00000624317 287 ntBASIC27.51■■□□□ 1.99
MSH5O43196 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC27.51■■□□□ 1.99
MSH5O43196 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC27.51■■□□□ 1.99
MSH5O43196 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC27.5■■□□□ 1.99
MSH5O43196 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
MSH5O43196 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC27.5■■□□□ 1.99
MSH5O43196 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC27.5■■□□□ 1.99
MSH5O43196 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
MSH5O43196 ZNF736P11Y-201ENST00000442535 1213 ntBASIC27.5■■□□□ 1.99
MSH5O43196 ZNF736P12Y-201ENST00000443152 1243 ntBASIC27.5■■□□□ 1.99
MSH5O43196 AC093787.1-201ENST00000450396 207 ntBASIC27.5■■□□□ 1.99
MSH5O43196 AC010141.2-201ENST00000452426 721 ntBASIC27.5■■□□□ 1.99
MSH5O43196 ZNF736P4Y-201ENST00000454995 1243 ntBASIC27.5■■□□□ 1.99
MSH5O43196 ADM-205ENST00000528544 586 ntTSL 2 BASIC27.5■■□□□ 1.99
MSH5O43196 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC27.5■■□□□ 1.99
MSH5O43196 AC008694.1-202ENST00000636953 945 ntBASIC27.5■■□□□ 1.99
MSH5O43196 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC27.5■■□□□ 1.99
MSH5O43196 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC27.5■■□□□ 1.99
MSH5O43196 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC27.5■■□□□ 1.99
MSH5O43196 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC27.5■■□□□ 1.99
MSH5O43196 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC27.5■■□□□ 1.99
MSH5O43196 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC27.49■■□□□ 1.99
MSH5O43196 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC27.49■■□□□ 1.99
MSH5O43196 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC27.49■■□□□ 1.99
MSH5O43196 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC27.49■■□□□ 1.99
MSH5O43196 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC27.49■■□□□ 1.99
MSH5O43196 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
MSH5O43196 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC27.49■■□□□ 1.99
MSH5O43196 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
MSH5O43196 BX276092.2-201ENST00000417668 665 ntBASIC27.49■■□□□ 1.99
MSH5O43196 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC27.49■■□□□ 1.99
MSH5O43196 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC27.49■■□□□ 1.99
MSH5O43196 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC27.49■■□□□ 1.99
MSH5O43196 AC004908.3-201ENST00000610248 625 ntBASIC27.49■■□□□ 1.99
MSH5O43196 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
MSH5O43196 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
MSH5O43196 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
MSH5O43196 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
MSH5O43196 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC27.48■■□□□ 1.99
MSH5O43196 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
MSH5O43196 UQCRFS1P1-201ENST00000435169 820 ntBASIC27.48■■□□□ 1.99
MSH5O43196 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC27.48■■□□□ 1.99
MSH5O43196 KRT18P20-201ENST00000548986 1279 ntBASIC27.48■■□□□ 1.99
MSH5O43196 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
MSH5O43196 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC27.48■■□□□ 1.99
MSH5O43196 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
MSH5O43196 AC016405.3-201ENST00000607710 860 ntBASIC27.48■■□□□ 1.99
MSH5O43196 AC092118.2-201ENST00000613495 667 ntBASIC27.48■■□□□ 1.99
MSH5O43196 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC27.48■■□□□ 1.99
MSH5O43196 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC27.48■■□□□ 1.99
MSH5O43196 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
MSH5O43196 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC27.48■■□□□ 1.99
MSH5O43196 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC27.48■■□□□ 1.99
MSH5O43196 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC27.48■■□□□ 1.99
MSH5O43196 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
MSH5O43196 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC27.47■■□□□ 1.99
MSH5O43196 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC27.47■■□□□ 1.99
MSH5O43196 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC27.47■■□□□ 1.99
MSH5O43196 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC27.47■■□□□ 1.99
MSH5O43196 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC27.47■■□□□ 1.99
MSH5O43196 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC27.47■■□□□ 1.99
MSH5O43196 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
MSH5O43196 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC27.47■■□□□ 1.99
MSH5O43196 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
MSH5O43196 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
MSH5O43196 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC27.46■■□□□ 1.99
MSH5O43196 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC27.46■■□□□ 1.99
MSH5O43196 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC27.46■■□□□ 1.99
MSH5O43196 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC27.46■■□□□ 1.99
MSH5O43196 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC27.46■■□□□ 1.99
MSH5O43196 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
MSH5O43196 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC27.46■■□□□ 1.99
MSH5O43196 COA4-204ENST00000541455 1038 ntTSL 5 BASIC27.46■■□□□ 1.99
MSH5O43196 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC27.46■■□□□ 1.99
MSH5O43196 AC083880.1-201ENST00000608266 535 ntBASIC27.46■■□□□ 1.99
MSH5O43196 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
MSH5O43196 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC27.46■■□□□ 1.99
MSH5O43196 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
MSH5O43196 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.99
MSH5O43196 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
MSH5O43196 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC27.45■■□□□ 1.98
MSH5O43196 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
MSH5O43196 AC128676.1-201ENST00000454392 318 ntBASIC27.45■■□□□ 1.98
MSH5O43196 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC27.45■■□□□ 1.98
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms