Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PCDHB3Q9Y5E6 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PCDHB3Q9Y5E6 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC20.09■□□□□ 0.81
PCDHB3Q9Y5E6 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PCDHB3Q9Y5E6 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.09■□□□□ 0.81
PCDHB3Q9Y5E6 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC20.09■□□□□ 0.81
PCDHB3Q9Y5E6 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PCDHB3Q9Y5E6 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC20.09■□□□□ 0.81
PCDHB3Q9Y5E6 CNN2P6-201ENST00000439038 900 ntBASIC20.09■□□□□ 0.81
PCDHB3Q9Y5E6 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC20.09■□□□□ 0.81
PCDHB3Q9Y5E6 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC20.09■□□□□ 0.81
PCDHB3Q9Y5E6 AC013268.1-206ENST00000638368 961 ntBASIC20.09■□□□□ 0.81
PCDHB3Q9Y5E6 AC112229.1-201ENST00000639295 961 ntBASIC20.09■□□□□ 0.81
PCDHB3Q9Y5E6 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC20.09■□□□□ 0.81
PCDHB3Q9Y5E6 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.09■□□□□ 0.81
PCDHB3Q9Y5E6 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PCDHB3Q9Y5E6 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC20.09■□□□□ 0.81
PCDHB3Q9Y5E6 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
PCDHB3Q9Y5E6 LINC01006-201ENST00000333319 2292 ntBASIC20.09■□□□□ 0.81
PCDHB3Q9Y5E6 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PCDHB3Q9Y5E6 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PCDHB3Q9Y5E6 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PCDHB3Q9Y5E6 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
PCDHB3Q9Y5E6 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
PCDHB3Q9Y5E6 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
PCDHB3Q9Y5E6 SLC7A5P2-201ENST00000553010 536 ntBASIC20.08■□□□□ 0.81
PCDHB3Q9Y5E6 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC20.08■□□□□ 0.81
PCDHB3Q9Y5E6 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
PCDHB3Q9Y5E6 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC20.08■□□□□ 0.81
PCDHB3Q9Y5E6 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC20.08■□□□□ 0.8
PCDHB3Q9Y5E6 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
PCDHB3Q9Y5E6 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.08■□□□□ 0.8
PCDHB3Q9Y5E6 AL049796.1-201ENST00000565336 1766 ntBASIC20.08■□□□□ 0.8
PCDHB3Q9Y5E6 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
PCDHB3Q9Y5E6 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC20.08■□□□□ 0.8
PCDHB3Q9Y5E6 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PCDHB3Q9Y5E6 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PCDHB3Q9Y5E6 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
PCDHB3Q9Y5E6 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC20.07■□□□□ 0.8
PCDHB3Q9Y5E6 FEM1AP1-201ENST00000431297 1995 ntBASIC20.07■□□□□ 0.8
PCDHB3Q9Y5E6 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PCDHB3Q9Y5E6 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PCDHB3Q9Y5E6 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
PCDHB3Q9Y5E6 METTL15-202ENST00000403099 795 ntTSL 5 BASIC20.07■□□□□ 0.8
PCDHB3Q9Y5E6 TERF1P5-201ENST00000477545 1207 ntBASIC20.07■□□□□ 0.8
PCDHB3Q9Y5E6 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.07■□□□□ 0.8
PCDHB3Q9Y5E6 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC20.07■□□□□ 0.8
PCDHB3Q9Y5E6 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
PCDHB3Q9Y5E6 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
PCDHB3Q9Y5E6 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
PCDHB3Q9Y5E6 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
PCDHB3Q9Y5E6 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
PCDHB3Q9Y5E6 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
PCDHB3Q9Y5E6 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
PCDHB3Q9Y5E6 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.06■□□□□ 0.8
PCDHB3Q9Y5E6 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC20.06■□□□□ 0.8
PCDHB3Q9Y5E6 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PCDHB3Q9Y5E6 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.06■□□□□ 0.8
PCDHB3Q9Y5E6 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
PCDHB3Q9Y5E6 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PCDHB3Q9Y5E6 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
PCDHB3Q9Y5E6 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
PCDHB3Q9Y5E6 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
PCDHB3Q9Y5E6 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
PCDHB3Q9Y5E6 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PCDHB3Q9Y5E6 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC20.06■□□□□ 0.8
PCDHB3Q9Y5E6 AF201337.1-201ENST00000520239 748 ntBASIC20.06■□□□□ 0.8
PCDHB3Q9Y5E6 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PCDHB3Q9Y5E6 KRT18P6-201ENST00000555540 1265 ntBASIC20.06■□□□□ 0.8
PCDHB3Q9Y5E6 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC20.06■□□□□ 0.8
PCDHB3Q9Y5E6 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC20.06■□□□□ 0.8
PCDHB3Q9Y5E6 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
PCDHB3Q9Y5E6 GAMT-205ENST00000640762 751 ntTSL 5 BASIC20.06■□□□□ 0.8
PCDHB3Q9Y5E6 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.06■□□□□ 0.8
PCDHB3Q9Y5E6 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PCDHB3Q9Y5E6 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
PCDHB3Q9Y5E6 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
PCDHB3Q9Y5E6 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC20.06■□□□□ 0.8
PCDHB3Q9Y5E6 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
PCDHB3Q9Y5E6 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
PCDHB3Q9Y5E6 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
PCDHB3Q9Y5E6 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PCDHB3Q9Y5E6 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
PCDHB3Q9Y5E6 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.05■□□□□ 0.8
PCDHB3Q9Y5E6 AC007322.4-201ENST00000509611 723 ntBASIC20.05■□□□□ 0.8
PCDHB3Q9Y5E6 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
PCDHB3Q9Y5E6 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
PCDHB3Q9Y5E6 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
PCDHB3Q9Y5E6 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC20.05■□□□□ 0.8
PCDHB3Q9Y5E6 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
PCDHB3Q9Y5E6 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PCDHB3Q9Y5E6 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
PCDHB3Q9Y5E6 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PCDHB3Q9Y5E6 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC20.05■□□□□ 0.8
PCDHB3Q9Y5E6 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC20.05■□□□□ 0.8
PCDHB3Q9Y5E6 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC20.05■□□□□ 0.8
PCDHB3Q9Y5E6 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
PCDHB3Q9Y5E6 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
PCDHB3Q9Y5E6 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PCDHB3Q9Y5E6 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms