Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SHROOM3Q8TF72 FP700111.2-201ENST00000619190 1892 ntBASIC21.03■□□□□ 0.96
SHROOM3Q8TF72 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC21.03■□□□□ 0.96
SHROOM3Q8TF72 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC21.03■□□□□ 0.96
SHROOM3Q8TF72 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC21.02■□□□□ 0.96
SHROOM3Q8TF72 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
SHROOM3Q8TF72 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
SHROOM3Q8TF72 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
SHROOM3Q8TF72 BET1L-204ENST00000410108 637 ntTSL 3 BASIC21.02■□□□□ 0.96
SHROOM3Q8TF72 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
SHROOM3Q8TF72 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SHROOM3Q8TF72 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.95
SHROOM3Q8TF72 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.95
SHROOM3Q8TF72 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
SHROOM3Q8TF72 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SHROOM3Q8TF72 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SHROOM3Q8TF72 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC21.01■□□□□ 0.95
SHROOM3Q8TF72 PLLP-204ENST00000569059 665 ntTSL 3 BASIC21.01■□□□□ 0.95
SHROOM3Q8TF72 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC21.01■□□□□ 0.95
SHROOM3Q8TF72 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SHROOM3Q8TF72 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC21.01■□□□□ 0.95
SHROOM3Q8TF72 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
SHROOM3Q8TF72 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SHROOM3Q8TF72 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SHROOM3Q8TF72 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
SHROOM3Q8TF72 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC21.01■□□□□ 0.95
SHROOM3Q8TF72 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SHROOM3Q8TF72 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SHROOM3Q8TF72 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SHROOM3Q8TF72 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC21.01■□□□□ 0.95
SHROOM3Q8TF72 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SHROOM3Q8TF72 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC21■□□□□ 0.95
SHROOM3Q8TF72 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
SHROOM3Q8TF72 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC21■□□□□ 0.95
SHROOM3Q8TF72 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC21■□□□□ 0.95
SHROOM3Q8TF72 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC21■□□□□ 0.95
SHROOM3Q8TF72 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SHROOM3Q8TF72 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
SHROOM3Q8TF72 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
SHROOM3Q8TF72 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC21■□□□□ 0.95
SHROOM3Q8TF72 AC016405.3-201ENST00000607710 860 ntBASIC21■□□□□ 0.95
SHROOM3Q8TF72 AC011767.1-201ENST00000617410 1153 ntBASIC21■□□□□ 0.95
SHROOM3Q8TF72 AL050303.2-201ENST00000619798 666 ntBASIC21■□□□□ 0.95
SHROOM3Q8TF72 PARP1-210ENST00000629232 477 ntTSL 5 BASIC21■□□□□ 0.95
SHROOM3Q8TF72 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
SHROOM3Q8TF72 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC21■□□□□ 0.95
SHROOM3Q8TF72 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
SHROOM3Q8TF72 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC21■□□□□ 0.95
SHROOM3Q8TF72 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SHROOM3Q8TF72 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC21■□□□□ 0.95
SHROOM3Q8TF72 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC21■□□□□ 0.95
SHROOM3Q8TF72 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SHROOM3Q8TF72 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC21■□□□□ 0.95
SHROOM3Q8TF72 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
SHROOM3Q8TF72 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SHROOM3Q8TF72 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC21■□□□□ 0.95
SHROOM3Q8TF72 AC007225.1-201ENST00000566331 1836 ntBASIC20.99■□□□□ 0.95
SHROOM3Q8TF72 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SHROOM3Q8TF72 APTR-205ENST00000447009 902 ntTSL 2 BASIC20.99■□□□□ 0.95
SHROOM3Q8TF72 TERF1P5-201ENST00000477545 1207 ntBASIC20.99■□□□□ 0.95
SHROOM3Q8TF72 AL162412.1-201ENST00000567129 965 ntBASIC20.99■□□□□ 0.95
SHROOM3Q8TF72 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC20.99■□□□□ 0.95
SHROOM3Q8TF72 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
SHROOM3Q8TF72 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC20.99■□□□□ 0.95
SHROOM3Q8TF72 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SHROOM3Q8TF72 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
SHROOM3Q8TF72 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC20.99■□□□□ 0.95
SHROOM3Q8TF72 AC121338.2-201ENST00000622535 1744 ntBASIC20.99■□□□□ 0.95
SHROOM3Q8TF72 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
SHROOM3Q8TF72 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC20.99■□□□□ 0.95
SHROOM3Q8TF72 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SHROOM3Q8TF72 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SHROOM3Q8TF72 VMO1-204ENST00000441199 741 ntTSL 2 BASIC20.99■□□□□ 0.95
SHROOM3Q8TF72 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC20.99■□□□□ 0.95
SHROOM3Q8TF72 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SHROOM3Q8TF72 AL121603.2-201ENST00000557373 2117 ntBASIC20.99■□□□□ 0.95
SHROOM3Q8TF72 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SHROOM3Q8TF72 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.98■□□□□ 0.95
SHROOM3Q8TF72 AC011484.1-201ENST00000377652 1995 ntBASIC20.98■□□□□ 0.95
SHROOM3Q8TF72 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
SHROOM3Q8TF72 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SHROOM3Q8TF72 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SHROOM3Q8TF72 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC20.98■□□□□ 0.95
SHROOM3Q8TF72 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SHROOM3Q8TF72 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC20.98■□□□□ 0.95
SHROOM3Q8TF72 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
SHROOM3Q8TF72 CD99P1-205ENST00000527459 561 ntBASIC20.98■□□□□ 0.95
SHROOM3Q8TF72 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC20.98■□□□□ 0.95
SHROOM3Q8TF72 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
SHROOM3Q8TF72 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.98■□□□□ 0.95
SHROOM3Q8TF72 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
SHROOM3Q8TF72 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
SHROOM3Q8TF72 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SHROOM3Q8TF72 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.98■□□□□ 0.95
SHROOM3Q8TF72 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
SHROOM3Q8TF72 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SHROOM3Q8TF72 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC20.97■□□□□ 0.95
SHROOM3Q8TF72 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
SHROOM3Q8TF72 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SHROOM3Q8TF72 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms