Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC19.71■□□□□ 0.75
CLHC1Q8NHS4 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CLHC1Q8NHS4 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
CLHC1Q8NHS4 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CLHC1Q8NHS4 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
CLHC1Q8NHS4 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
CLHC1Q8NHS4 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CLHC1Q8NHS4 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.7■□□□□ 0.74
CLHC1Q8NHS4 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC19.7■□□□□ 0.74
CLHC1Q8NHS4 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CLHC1Q8NHS4 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.7■□□□□ 0.74
CLHC1Q8NHS4 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLHC1Q8NHS4 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLHC1Q8NHS4 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLHC1Q8NHS4 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CLHC1Q8NHS4 POU5F1P4-201ENST00000413175 1085 ntBASIC19.7■□□□□ 0.74
CLHC1Q8NHS4 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC19.7■□□□□ 0.74
CLHC1Q8NHS4 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLHC1Q8NHS4 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLHC1Q8NHS4 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CLHC1Q8NHS4 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLHC1Q8NHS4 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CLHC1Q8NHS4 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CLHC1Q8NHS4 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLHC1Q8NHS4 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLHC1Q8NHS4 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLHC1Q8NHS4 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC19.69■□□□□ 0.74
CLHC1Q8NHS4 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLHC1Q8NHS4 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CLHC1Q8NHS4 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLHC1Q8NHS4 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLHC1Q8NHS4 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC19.69■□□□□ 0.74
CLHC1Q8NHS4 AC138907.5-202ENST00000569484 235 ntBASIC19.69■□□□□ 0.74
CLHC1Q8NHS4 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC19.69■□□□□ 0.74
CLHC1Q8NHS4 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLHC1Q8NHS4 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CLHC1Q8NHS4 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC19.69■□□□□ 0.74
CLHC1Q8NHS4 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLHC1Q8NHS4 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLHC1Q8NHS4 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLHC1Q8NHS4 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLHC1Q8NHS4 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLHC1Q8NHS4 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC19.69■□□□□ 0.74
CLHC1Q8NHS4 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC19.69■□□□□ 0.74
CLHC1Q8NHS4 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CLHC1Q8NHS4 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
CLHC1Q8NHS4 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC19.68■□□□□ 0.74
CLHC1Q8NHS4 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CLHC1Q8NHS4 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC19.68■□□□□ 0.74
CLHC1Q8NHS4 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC19.68■□□□□ 0.74
CLHC1Q8NHS4 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.68■□□□□ 0.74
CLHC1Q8NHS4 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLHC1Q8NHS4 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC19.68■□□□□ 0.74
CLHC1Q8NHS4 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC19.68■□□□□ 0.74
CLHC1Q8NHS4 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC19.68■□□□□ 0.74
CLHC1Q8NHS4 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC19.68■□□□□ 0.74
CLHC1Q8NHS4 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC19.68■□□□□ 0.74
CLHC1Q8NHS4 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CLHC1Q8NHS4 AC104187.1-201ENST00000607510 612 ntBASIC19.68■□□□□ 0.74
CLHC1Q8NHS4 RARRES2P11-201ENST00000635158 484 ntBASIC19.68■□□□□ 0.74
CLHC1Q8NHS4 AC112907.3-201ENST00000577781 2400 ntBASIC19.68■□□□□ 0.74
CLHC1Q8NHS4 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CLHC1Q8NHS4 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLHC1Q8NHS4 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
CLHC1Q8NHS4 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLHC1Q8NHS4 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
CLHC1Q8NHS4 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLHC1Q8NHS4 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CLHC1Q8NHS4 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC19.68■□□□□ 0.74
CLHC1Q8NHS4 LINC02228-203ENST00000641970 1355 ntBASIC19.68■□□□□ 0.74
CLHC1Q8NHS4 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLHC1Q8NHS4 DET1-207ENST00000564406 2315 ntTSL 2 BASIC19.68■□□□□ 0.74
CLHC1Q8NHS4 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLHC1Q8NHS4 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLHC1Q8NHS4 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC19.67■□□□□ 0.74
CLHC1Q8NHS4 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLHC1Q8NHS4 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC19.67■□□□□ 0.74
CLHC1Q8NHS4 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLHC1Q8NHS4 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLHC1Q8NHS4 JTB-203ENST00000368589 1216 ntTSL 2 BASIC19.67■□□□□ 0.74
CLHC1Q8NHS4 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
CLHC1Q8NHS4 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CLHC1Q8NHS4 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLHC1Q8NHS4 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLHC1Q8NHS4 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC19.67■□□□□ 0.74
CLHC1Q8NHS4 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
CLHC1Q8NHS4 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CLHC1Q8NHS4 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC19.67■□□□□ 0.74
CLHC1Q8NHS4 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLHC1Q8NHS4 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
CLHC1Q8NHS4 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLHC1Q8NHS4 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC19.67■□□□□ 0.74
CLHC1Q8NHS4 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CLHC1Q8NHS4 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.66■□□□□ 0.74
CLHC1Q8NHS4 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLHC1Q8NHS4 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC19.66■□□□□ 0.74
CLHC1Q8NHS4 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC19.66■□□□□ 0.74
CLHC1Q8NHS4 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CLHC1Q8NHS4 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLHC1Q8NHS4 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms