Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL28A1Q2UY09 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.75■□□□□ 0.75
COL28A1Q2UY09 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
COL28A1Q2UY09 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL28A1Q2UY09 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL28A1Q2UY09 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL28A1Q2UY09 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
COL28A1Q2UY09 AC233702.5-201ENST00000584107 538 ntBASIC19.75■□□□□ 0.75
COL28A1Q2UY09 AL591742.1-201ENST00000604433 565 ntBASIC19.75■□□□□ 0.75
COL28A1Q2UY09 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC19.75■□□□□ 0.75
COL28A1Q2UY09 HLA-B-256ENST00000639848 1089 ntBASIC19.75■□□□□ 0.75
COL28A1Q2UY09 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC19.75■□□□□ 0.75
COL28A1Q2UY09 OR7E47P-201ENST00000546390 1422 ntBASIC19.75■□□□□ 0.75
COL28A1Q2UY09 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL28A1Q2UY09 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL28A1Q2UY09 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL28A1Q2UY09 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL28A1Q2UY09 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
COL28A1Q2UY09 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC19.74■□□□□ 0.75
COL28A1Q2UY09 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
COL28A1Q2UY09 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
COL28A1Q2UY09 NME6-213ENST00000451657 871 ntTSL 2 BASIC19.74■□□□□ 0.75
COL28A1Q2UY09 TSPY15P-201ENST00000457163 923 ntBASIC19.74■□□□□ 0.75
COL28A1Q2UY09 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
COL28A1Q2UY09 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC19.74■□□□□ 0.75
COL28A1Q2UY09 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC19.74■□□□□ 0.75
COL28A1Q2UY09 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC19.74■□□□□ 0.75
COL28A1Q2UY09 AC012306.2-201ENST00000609350 630 ntBASIC19.74■□□□□ 0.75
COL28A1Q2UY09 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC19.74■□□□□ 0.75
COL28A1Q2UY09 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC19.74■□□□□ 0.75
COL28A1Q2UY09 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC19.74■□□□□ 0.75
COL28A1Q2UY09 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL28A1Q2UY09 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC19.74■□□□□ 0.75
COL28A1Q2UY09 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC19.73■□□□□ 0.75
COL28A1Q2UY09 AL121603.2-201ENST00000557373 2117 ntBASIC19.73■□□□□ 0.75
COL28A1Q2UY09 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL28A1Q2UY09 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL28A1Q2UY09 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL28A1Q2UY09 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL28A1Q2UY09 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL28A1Q2UY09 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL28A1Q2UY09 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL28A1Q2UY09 RPS2P55-201ENST00000397318 883 ntBASIC19.73■□□□□ 0.75
COL28A1Q2UY09 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC19.73■□□□□ 0.75
COL28A1Q2UY09 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC19.73■□□□□ 0.75
COL28A1Q2UY09 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC19.73■□□□□ 0.75
COL28A1Q2UY09 AC107956.1-201ENST00000494359 873 ntBASIC19.73■□□□□ 0.75
COL28A1Q2UY09 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC19.73■□□□□ 0.75
COL28A1Q2UY09 PRKY-204ENST00000533551 1019 ntBASIC19.73■□□□□ 0.75
COL28A1Q2UY09 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC19.73■□□□□ 0.75
COL28A1Q2UY09 C2orf69P4-201ENST00000565394 541 ntBASIC19.73■□□□□ 0.75
COL28A1Q2UY09 AL162412.1-201ENST00000567129 965 ntBASIC19.73■□□□□ 0.75
COL28A1Q2UY09 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC19.73■□□□□ 0.75
COL28A1Q2UY09 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC19.73■□□□□ 0.75
COL28A1Q2UY09 CD177P1-201ENST00000606252 935 ntBASIC19.73■□□□□ 0.75
COL28A1Q2UY09 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
COL28A1Q2UY09 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL28A1Q2UY09 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC19.73■□□□□ 0.75
COL28A1Q2UY09 ECEL1P1-201ENST00000373592 1742 ntBASIC19.73■□□□□ 0.75
COL28A1Q2UY09 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL28A1Q2UY09 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL28A1Q2UY09 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC19.72■□□□□ 0.75
COL28A1Q2UY09 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL28A1Q2UY09 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC19.72■□□□□ 0.75
COL28A1Q2UY09 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL28A1Q2UY09 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC19.72■□□□□ 0.75
COL28A1Q2UY09 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC19.72■□□□□ 0.75
COL28A1Q2UY09 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL28A1Q2UY09 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC19.72■□□□□ 0.75
COL28A1Q2UY09 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL28A1Q2UY09 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC19.72■□□□□ 0.75
COL28A1Q2UY09 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC19.72■□□□□ 0.75
COL28A1Q2UY09 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC19.72■□□□□ 0.75
COL28A1Q2UY09 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC19.72■□□□□ 0.75
COL28A1Q2UY09 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL28A1Q2UY09 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL28A1Q2UY09 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL28A1Q2UY09 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC19.72■□□□□ 0.75
COL28A1Q2UY09 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC19.71■□□□□ 0.75
COL28A1Q2UY09 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC19.71■□□□□ 0.75
COL28A1Q2UY09 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC19.71■□□□□ 0.75
COL28A1Q2UY09 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC19.71■□□□□ 0.75
COL28A1Q2UY09 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL28A1Q2UY09 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL28A1Q2UY09 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL28A1Q2UY09 DHDH-203ENST00000522614 776 ntTSL 5 BASIC19.71■□□□□ 0.75
COL28A1Q2UY09 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC19.71■□□□□ 0.75
COL28A1Q2UY09 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC19.71■□□□□ 0.75
COL28A1Q2UY09 AC069544.1-201ENST00000609399 999 ntBASIC19.71■□□□□ 0.75
COL28A1Q2UY09 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL28A1Q2UY09 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL28A1Q2UY09 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL28A1Q2UY09 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL28A1Q2UY09 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC19.71■□□□□ 0.75
COL28A1Q2UY09 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL28A1Q2UY09 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL28A1Q2UY09 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC19.71■□□□□ 0.75
COL28A1Q2UY09 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL28A1Q2UY09 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC19.71■□□□□ 0.75
COL28A1Q2UY09 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 60.2 ms