Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC18.41■□□□□ 0.54
H3F3AP84243 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
H3F3AP84243 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
H3F3AP84243 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC18.4■□□□□ 0.54
H3F3AP84243 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC18.4■□□□□ 0.54
H3F3AP84243 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
H3F3AP84243 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC18.4■□□□□ 0.54
H3F3AP84243 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
H3F3AP84243 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC18.4■□□□□ 0.54
H3F3AP84243 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC18.4■□□□□ 0.54
H3F3AP84243 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC18.4■□□□□ 0.54
H3F3AP84243 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC18.4■□□□□ 0.54
H3F3AP84243 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
H3F3AP84243 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC18.4■□□□□ 0.54
H3F3AP84243 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
H3F3AP84243 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
H3F3AP84243 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
H3F3AP84243 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
H3F3AP84243 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
H3F3AP84243 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC18.39■□□□□ 0.54
H3F3AP84243 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
H3F3AP84243 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
H3F3AP84243 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
H3F3AP84243 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
H3F3AP84243 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC18.39■□□□□ 0.53
H3F3AP84243 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
H3F3AP84243 VMO1-204ENST00000441199 741 ntTSL 2 BASIC18.39■□□□□ 0.53
H3F3AP84243 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC18.39■□□□□ 0.53
H3F3AP84243 RARRES2P4-201ENST00000514074 484 ntBASIC18.39■□□□□ 0.53
H3F3AP84243 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC18.39■□□□□ 0.53
H3F3AP84243 AC005181.1-201ENST00000604782 1256 ntBASIC18.39■□□□□ 0.53
H3F3AP84243 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
H3F3AP84243 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
H3F3AP84243 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC18.39■□□□□ 0.53
H3F3AP84243 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
H3F3AP84243 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC18.39■□□□□ 0.53
H3F3AP84243 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC18.38■□□□□ 0.53
H3F3AP84243 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
H3F3AP84243 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
H3F3AP84243 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
H3F3AP84243 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
H3F3AP84243 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
H3F3AP84243 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
H3F3AP84243 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
H3F3AP84243 AC027702.1-201ENST00000563810 1770 ntBASIC18.38■□□□□ 0.53
H3F3AP84243 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
H3F3AP84243 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
H3F3AP84243 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
H3F3AP84243 BET1L-204ENST00000410108 637 ntTSL 3 BASIC18.38■□□□□ 0.53
H3F3AP84243 CYP2T1P-201ENST00000432607 1285 ntBASIC18.38■□□□□ 0.53
H3F3AP84243 CROCCP5-201ENST00000436658 830 ntBASIC18.38■□□□□ 0.53
H3F3AP84243 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC18.38■□□□□ 0.53
H3F3AP84243 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC18.38■□□□□ 0.53
H3F3AP84243 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
H3F3AP84243 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
H3F3AP84243 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
H3F3AP84243 STAC-204ENST00000457375 1366 ntTSL 2 BASIC18.38■□□□□ 0.53
H3F3AP84243 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
H3F3AP84243 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
H3F3AP84243 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC18.38■□□□□ 0.53
H3F3AP84243 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
H3F3AP84243 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
H3F3AP84243 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC18.37■□□□□ 0.53
H3F3AP84243 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
H3F3AP84243 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC18.37■□□□□ 0.53
H3F3AP84243 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
H3F3AP84243 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
H3F3AP84243 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
H3F3AP84243 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC18.37■□□□□ 0.53
H3F3AP84243 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
H3F3AP84243 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
H3F3AP84243 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC18.37■□□□□ 0.53
H3F3AP84243 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
H3F3AP84243 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC18.37■□□□□ 0.53
H3F3AP84243 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
H3F3AP84243 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
H3F3AP84243 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
H3F3AP84243 AC133552.2-202ENST00000575694 574 ntBASIC18.37■□□□□ 0.53
H3F3AP84243 AC100791.3-201ENST00000617619 330 ntBASIC18.37■□□□□ 0.53
H3F3AP84243 OR10C1-204ENST00000622521 1039 ntBASIC18.37■□□□□ 0.53
H3F3AP84243 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
H3F3AP84243 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
H3F3AP84243 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
H3F3AP84243 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
H3F3AP84243 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
H3F3AP84243 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
H3F3AP84243 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
H3F3AP84243 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
H3F3AP84243 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
H3F3AP84243 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC18.36■□□□□ 0.53
H3F3AP84243 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
H3F3AP84243 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC18.36■□□□□ 0.53
H3F3AP84243 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
H3F3AP84243 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
H3F3AP84243 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
H3F3AP84243 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
H3F3AP84243 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC18.36■□□□□ 0.53
H3F3AP84243 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
H3F3AP84243 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
H3F3AP84243 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms