Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
CTCFP49711 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC23.99■■□□□ 1.43
CTCFP49711 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC23.99■■□□□ 1.43
CTCFP49711 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
CTCFP49711 AC004812.2-201ENST00000611079 2094 ntBASIC23.98■■□□□ 1.43
CTCFP49711 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC23.98■■□□□ 1.43
CTCFP49711 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CTCFP49711 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC23.98■■□□□ 1.43
CTCFP49711 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC23.98■■□□□ 1.43
CTCFP49711 DUSP5P1-201ENST00000441325 1139 ntBASIC23.98■■□□□ 1.43
CTCFP49711 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC23.98■■□□□ 1.43
CTCFP49711 TMA16-209ENST00000513272 803 ntTSL 2 BASIC23.98■■□□□ 1.43
CTCFP49711 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC23.98■■□□□ 1.43
CTCFP49711 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
CTCFP49711 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CTCFP49711 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
CTCFP49711 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC23.98■■□□□ 1.43
CTCFP49711 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CTCFP49711 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
CTCFP49711 FAM197Y1-201ENST00000421178 764 ntBASIC23.97■■□□□ 1.43
CTCFP49711 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
CTCFP49711 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
CTCFP49711 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC23.97■■□□□ 1.43
CTCFP49711 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC23.97■■□□□ 1.43
CTCFP49711 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC23.97■■□□□ 1.43
CTCFP49711 AC087633.2-202ENST00000565166 1439 ntBASIC23.97■■□□□ 1.43
CTCFP49711 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC23.97■■□□□ 1.43
CTCFP49711 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
CTCFP49711 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
CTCFP49711 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC23.96■■□□□ 1.43
CTCFP49711 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
CTCFP49711 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC23.96■■□□□ 1.43
CTCFP49711 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC23.96■■□□□ 1.43
CTCFP49711 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC23.96■■□□□ 1.43
CTCFP49711 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC23.96■■□□□ 1.43
CTCFP49711 AC105020.6-201ENST00000621523 1217 ntBASIC23.96■■□□□ 1.43
CTCFP49711 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC23.95■■□□□ 1.43
CTCFP49711 SRI-203ENST00000419179 1307 ntTSL 2 BASIC23.95■■□□□ 1.42
CTCFP49711 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC23.95■■□□□ 1.42
CTCFP49711 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC23.95■■□□□ 1.42
CTCFP49711 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC23.95■■□□□ 1.42
CTCFP49711 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC23.95■■□□□ 1.42
CTCFP49711 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC23.95■■□□□ 1.42
CTCFP49711 GPALPP1-207ENST00000611650 899 ntBASIC23.95■■□□□ 1.42
CTCFP49711 AC006011.2-201ENST00000621313 1158 ntBASIC23.95■■□□□ 1.42
CTCFP49711 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
CTCFP49711 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
CTCFP49711 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC23.95■■□□□ 1.42
CTCFP49711 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
CTCFP49711 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
CTCFP49711 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
CTCFP49711 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC23.94■■□□□ 1.42
CTCFP49711 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC23.94■■□□□ 1.42
CTCFP49711 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
CTCFP49711 GUK1-204ENST00000366721 689 ntTSL 3 BASIC23.94■■□□□ 1.42
CTCFP49711 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC23.94■■□□□ 1.42
CTCFP49711 AL353807.1-201ENST00000427475 662 ntBASIC23.94■■□□□ 1.42
CTCFP49711 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC23.94■■□□□ 1.42
CTCFP49711 AC009947.2-201ENST00000444014 672 ntBASIC23.94■■□□□ 1.42
CTCFP49711 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC23.94■■□□□ 1.42
CTCFP49711 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC23.94■■□□□ 1.42
CTCFP49711 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC23.94■■□□□ 1.42
CTCFP49711 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
CTCFP49711 AC133561.1-201ENST00000568600 2415 ntBASIC23.94■■□□□ 1.42
CTCFP49711 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC23.94■■□□□ 1.42
CTCFP49711 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
CTCFP49711 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC23.94■■□□□ 1.42
CTCFP49711 CYP2D8P-201ENST00000433633 1490 ntBASIC23.94■■□□□ 1.42
CTCFP49711 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC23.94■■□□□ 1.42
CTCFP49711 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC23.93■■□□□ 1.42
CTCFP49711 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
CTCFP49711 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
CTCFP49711 HTR7P1-201ENST00000538670 1336 ntBASIC23.93■■□□□ 1.42
CTCFP49711 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC23.93■■□□□ 1.42
CTCFP49711 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
CTCFP49711 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC23.93■■□□□ 1.42
CTCFP49711 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
CTCFP49711 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC23.93■■□□□ 1.42
CTCFP49711 ISCU-203ENST00000431221 799 ntTSL 2 BASIC23.93■■□□□ 1.42
CTCFP49711 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
CTCFP49711 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC23.93■■□□□ 1.42
CTCFP49711 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC23.93■■□□□ 1.42
CTCFP49711 LINC01238-205ENST00000567549 1107 ntBASIC23.93■■□□□ 1.42
CTCFP49711 AC061975.6-201ENST00000579045 1553 ntBASIC23.93■■□□□ 1.42
CTCFP49711 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC23.93■■□□□ 1.42
CTCFP49711 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC23.93■■□□□ 1.42
CTCFP49711 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC23.93■■□□□ 1.42
CTCFP49711 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
CTCFP49711 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
CTCFP49711 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC23.92■■□□□ 1.42
CTCFP49711 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
CTCFP49711 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
CTCFP49711 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
CTCFP49711 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC23.92■■□□□ 1.42
CTCFP49711 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC23.92■■□□□ 1.42
CTCFP49711 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
CTCFP49711 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC23.92■■□□□ 1.42
CTCFP49711 VMO1-204ENST00000441199 741 ntTSL 2 BASIC23.92■■□□□ 1.42
CTCFP49711 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
CTCFP49711 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms