Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
HLA-DMBP28068 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
HLA-DMBP28068 EXOC3-AS1-202ENST00000623673 1663 ntBASIC15.63■□□□□ 0.09
HLA-DMBP28068 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
HLA-DMBP28068 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC15.63■□□□□ 0.09
HLA-DMBP28068 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
HLA-DMBP28068 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
HLA-DMBP28068 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
HLA-DMBP28068 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
HLA-DMBP28068 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
HLA-DMBP28068 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
HLA-DMBP28068 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
HLA-DMBP28068 PARL-206ENST00000435888 1098 ntTSL 5 BASIC15.63■□□□□ 0.09
HLA-DMBP28068 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
HLA-DMBP28068 YBX1P1-201ENST00000445822 960 ntBASIC15.63■□□□□ 0.09
HLA-DMBP28068 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
HLA-DMBP28068 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC15.63■□□□□ 0.09
HLA-DMBP28068 AP004607.4-201ENST00000530158 1459 ntBASIC15.63■□□□□ 0.09
HLA-DMBP28068 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
HLA-DMBP28068 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
HLA-DMBP28068 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
HLA-DMBP28068 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
HLA-DMBP28068 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
HLA-DMBP28068 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
HLA-DMBP28068 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
HLA-DMBP28068 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
HLA-DMBP28068 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
HLA-DMBP28068 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC15.62■□□□□ 0.09
HLA-DMBP28068 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
HLA-DMBP28068 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
HLA-DMBP28068 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
HLA-DMBP28068 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
HLA-DMBP28068 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
HLA-DMBP28068 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC15.62■□□□□ 0.09
HLA-DMBP28068 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
HLA-DMBP28068 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
HLA-DMBP28068 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
HLA-DMBP28068 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC15.62■□□□□ 0.09
HLA-DMBP28068 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
HLA-DMBP28068 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC15.62■□□□□ 0.09
HLA-DMBP28068 AL162430.1-201ENST00000480705 870 ntBASIC15.62■□□□□ 0.09
HLA-DMBP28068 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
HLA-DMBP28068 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
HLA-DMBP28068 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC15.62■□□□□ 0.09
HLA-DMBP28068 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
HLA-DMBP28068 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
HLA-DMBP28068 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
HLA-DMBP28068 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
HLA-DMBP28068 AC020907.5-201ENST00000624372 1936 ntBASIC15.62■□□□□ 0.09
HLA-DMBP28068 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
HLA-DMBP28068 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
HLA-DMBP28068 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC15.62■□□□□ 0.09
HLA-DMBP28068 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
HLA-DMBP28068 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
HLA-DMBP28068 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
HLA-DMBP28068 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC15.62■□□□□ 0.09
HLA-DMBP28068 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC15.62■□□□□ 0.09
HLA-DMBP28068 AC112907.3-201ENST00000577781 2400 ntBASIC15.62■□□□□ 0.09
HLA-DMBP28068 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
HLA-DMBP28068 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HLA-DMBP28068 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
HLA-DMBP28068 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HLA-DMBP28068 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HLA-DMBP28068 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC15.61■□□□□ 0.09
HLA-DMBP28068 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HLA-DMBP28068 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
HLA-DMBP28068 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC15.61■□□□□ 0.09
HLA-DMBP28068 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC15.61■□□□□ 0.09
HLA-DMBP28068 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
HLA-DMBP28068 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HLA-DMBP28068 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HLA-DMBP28068 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC15.61■□□□□ 0.09
HLA-DMBP28068 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC15.61■□□□□ 0.09
HLA-DMBP28068 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC15.61■□□□□ 0.09
HLA-DMBP28068 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC15.61■□□□□ 0.09
HLA-DMBP28068 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
HLA-DMBP28068 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC15.61■□□□□ 0.09
HLA-DMBP28068 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC15.61■□□□□ 0.09
HLA-DMBP28068 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
HLA-DMBP28068 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HLA-DMBP28068 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
HLA-DMBP28068 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
HLA-DMBP28068 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HLA-DMBP28068 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC15.6■□□□□ 0.09
HLA-DMBP28068 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
HLA-DMBP28068 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HLA-DMBP28068 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC15.6■□□□□ 0.09
HLA-DMBP28068 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
HLA-DMBP28068 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HLA-DMBP28068 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HLA-DMBP28068 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC15.6■□□□□ 0.09
HLA-DMBP28068 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HLA-DMBP28068 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC15.6■□□□□ 0.09
HLA-DMBP28068 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
HLA-DMBP28068 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HLA-DMBP28068 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
HLA-DMBP28068 AC027612.3-201ENST00000413684 1047 ntBASIC15.6■□□□□ 0.09
HLA-DMBP28068 AC034268.1-201ENST00000441047 882 ntBASIC15.6■□□□□ 0.09
HLA-DMBP28068 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
HLA-DMBP28068 AC079140.4-201ENST00000507448 529 ntBASIC15.6■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms