Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CACNA1AO00555 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CACNA1AO00555 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CACNA1AO00555 KRT17P6-201ENST00000453795 1220 ntBASIC19.68■□□□□ 0.74
CACNA1AO00555 SERP1-205ENST00000487153 657 ntTSL 4 BASIC19.68■□□□□ 0.74
CACNA1AO00555 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CACNA1AO00555 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CACNA1AO00555 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC19.68■□□□□ 0.74
CACNA1AO00555 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CACNA1AO00555 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CACNA1AO00555 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
CACNA1AO00555 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC19.67■□□□□ 0.74
CACNA1AO00555 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC19.67■□□□□ 0.74
CACNA1AO00555 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC19.67■□□□□ 0.74
CACNA1AO00555 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC19.67■□□□□ 0.74
CACNA1AO00555 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CACNA1AO00555 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CACNA1AO00555 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC19.67■□□□□ 0.74
CACNA1AO00555 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CACNA1AO00555 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC19.67■□□□□ 0.74
CACNA1AO00555 CD81-212ENST00000526072 1172 ntTSL 5 BASIC19.67■□□□□ 0.74
CACNA1AO00555 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC19.67■□□□□ 0.74
CACNA1AO00555 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC19.67■□□□□ 0.74
CACNA1AO00555 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC19.67■□□□□ 0.74
CACNA1AO00555 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CACNA1AO00555 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
CACNA1AO00555 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CACNA1AO00555 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC19.66■□□□□ 0.74
CACNA1AO00555 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CACNA1AO00555 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CACNA1AO00555 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CACNA1AO00555 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CACNA1AO00555 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC19.66■□□□□ 0.74
CACNA1AO00555 CD320-202ENST00000537716 1119 ntTSL 2 BASIC19.66■□□□□ 0.74
CACNA1AO00555 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC19.66■□□□□ 0.74
CACNA1AO00555 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CACNA1AO00555 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CACNA1AO00555 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
CACNA1AO00555 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CACNA1AO00555 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CACNA1AO00555 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
CACNA1AO00555 AC093458.2-201ENST00000623150 629 ntBASIC19.66■□□□□ 0.74
CACNA1AO00555 CLN6-221ENST00000637494 765 ntTSL 5 BASIC19.66■□□□□ 0.74
CACNA1AO00555 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CACNA1AO00555 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC19.66■□□□□ 0.74
CACNA1AO00555 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CACNA1AO00555 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CACNA1AO00555 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CACNA1AO00555 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC19.65■□□□□ 0.74
CACNA1AO00555 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CACNA1AO00555 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC19.65■□□□□ 0.74
CACNA1AO00555 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CACNA1AO00555 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CACNA1AO00555 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CACNA1AO00555 LINC01960-201ENST00000563759 1884 ntBASIC19.65■□□□□ 0.74
CACNA1AO00555 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
CACNA1AO00555 PCED1CP-201ENST00000419887 785 ntBASIC19.65■□□□□ 0.74
CACNA1AO00555 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC19.65■□□□□ 0.74
CACNA1AO00555 AC128688.1-201ENST00000487626 519 ntBASIC19.65■□□□□ 0.74
CACNA1AO00555 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC19.65■□□□□ 0.74
CACNA1AO00555 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC19.65■□□□□ 0.74
CACNA1AO00555 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC19.65■□□□□ 0.74
CACNA1AO00555 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CACNA1AO00555 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
CACNA1AO00555 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.74
CACNA1AO00555 AC142086.6-201ENST00000621154 1765 ntBASIC19.64■□□□□ 0.74
CACNA1AO00555 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC19.64■□□□□ 0.74
CACNA1AO00555 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC19.64■□□□□ 0.74
CACNA1AO00555 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CACNA1AO00555 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CACNA1AO00555 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
CACNA1AO00555 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
CACNA1AO00555 AL390719.1-204ENST00000412397 1219 ntBASIC19.64■□□□□ 0.73
CACNA1AO00555 AC117947.1-201ENST00000427448 529 ntBASIC19.64■□□□□ 0.73
CACNA1AO00555 AC091390.4-202ENST00000476426 537 ntBASIC19.64■□□□□ 0.73
CACNA1AO00555 YBX1P2-201ENST00000489612 999 ntBASIC19.64■□□□□ 0.73
CACNA1AO00555 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC19.64■□□□□ 0.73
CACNA1AO00555 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
CACNA1AO00555 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CACNA1AO00555 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
CACNA1AO00555 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CACNA1AO00555 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CACNA1AO00555 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CACNA1AO00555 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CACNA1AO00555 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
CACNA1AO00555 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CACNA1AO00555 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CACNA1AO00555 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC19.63■□□□□ 0.73
CACNA1AO00555 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CACNA1AO00555 ECEL1P2-202ENST00000465689 757 ntBASIC19.63■□□□□ 0.73
CACNA1AO00555 FAM86EP-206ENST00000510506 987 ntBASIC19.63■□□□□ 0.73
CACNA1AO00555 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
CACNA1AO00555 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CACNA1AO00555 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CACNA1AO00555 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC19.63■□□□□ 0.73
CACNA1AO00555 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CACNA1AO00555 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CACNA1AO00555 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
CACNA1AO00555 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
CACNA1AO00555 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms