Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRAV1-1A0A0B4J248 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
TRAV1-1A0A0B4J248 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRAV1-1A0A0B4J248 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRAV1-1A0A0B4J248 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC16.09■□□□□ 0.17
TRAV1-1A0A0B4J248 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRAV1-1A0A0B4J248 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC16.09■□□□□ 0.17
TRAV1-1A0A0B4J248 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC16.09■□□□□ 0.17
TRAV1-1A0A0B4J248 MIR4449-201ENST00000578365 66 ntBASIC16.09■□□□□ 0.17
TRAV1-1A0A0B4J248 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRAV1-1A0A0B4J248 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TRAV1-1A0A0B4J248 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRAV1-1A0A0B4J248 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRAV1-1A0A0B4J248 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRAV1-1A0A0B4J248 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRAV1-1A0A0B4J248 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC16.09■□□□□ 0.17
TRAV1-1A0A0B4J248 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
TRAV1-1A0A0B4J248 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC16.09■□□□□ 0.17
TRAV1-1A0A0B4J248 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC16.09■□□□□ 0.17
TRAV1-1A0A0B4J248 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TRAV1-1A0A0B4J248 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC16.09■□□□□ 0.17
TRAV1-1A0A0B4J248 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TRAV1-1A0A0B4J248 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRAV1-1A0A0B4J248 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC16.09■□□□□ 0.17
TRAV1-1A0A0B4J248 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
TRAV1-1A0A0B4J248 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC16.08■□□□□ 0.17
TRAV1-1A0A0B4J248 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.17
TRAV1-1A0A0B4J248 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
TRAV1-1A0A0B4J248 NEFHP1-201ENST00000412845 2629 ntBASIC16.08■□□□□ 0.17
TRAV1-1A0A0B4J248 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TRAV1-1A0A0B4J248 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
TRAV1-1A0A0B4J248 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
TRAV1-1A0A0B4J248 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC16.08■□□□□ 0.16
TRAV1-1A0A0B4J248 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC16.08■□□□□ 0.16
TRAV1-1A0A0B4J248 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TRAV1-1A0A0B4J248 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC16.08■□□□□ 0.16
TRAV1-1A0A0B4J248 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC16.08■□□□□ 0.16
TRAV1-1A0A0B4J248 BHLHE23-202ENST00000612929 1109 ntBASIC16.08■□□□□ 0.16
TRAV1-1A0A0B4J248 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TRAV1-1A0A0B4J248 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC16.08■□□□□ 0.16
TRAV1-1A0A0B4J248 AC005082.1-201ENST00000413042 2259 ntBASIC16.08■□□□□ 0.16
TRAV1-1A0A0B4J248 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TRAV1-1A0A0B4J248 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TRAV1-1A0A0B4J248 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
TRAV1-1A0A0B4J248 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TRAV1-1A0A0B4J248 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
TRAV1-1A0A0B4J248 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TRAV1-1A0A0B4J248 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC16.08■□□□□ 0.16
TRAV1-1A0A0B4J248 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
TRAV1-1A0A0B4J248 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TRAV1-1A0A0B4J248 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC16.07■□□□□ 0.16
TRAV1-1A0A0B4J248 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRAV1-1A0A0B4J248 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC16.07■□□□□ 0.16
TRAV1-1A0A0B4J248 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
TRAV1-1A0A0B4J248 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
TRAV1-1A0A0B4J248 DUX4L18-201ENST00000553347 1267 ntBASIC16.07■□□□□ 0.16
TRAV1-1A0A0B4J248 AC241377.3-202ENST00000626088 1088 ntBASIC16.07■□□□□ 0.16
TRAV1-1A0A0B4J248 AC241585.3-202ENST00000628937 1088 ntBASIC16.07■□□□□ 0.16
TRAV1-1A0A0B4J248 AC245100.8-202ENST00000629247 1058 ntBASIC16.07■□□□□ 0.16
TRAV1-1A0A0B4J248 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC16.07■□□□□ 0.16
TRAV1-1A0A0B4J248 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRAV1-1A0A0B4J248 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRAV1-1A0A0B4J248 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TRAV1-1A0A0B4J248 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRAV1-1A0A0B4J248 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC16.07■□□□□ 0.16
TRAV1-1A0A0B4J248 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
TRAV1-1A0A0B4J248 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
TRAV1-1A0A0B4J248 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC16.06■□□□□ 0.16
TRAV1-1A0A0B4J248 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRAV1-1A0A0B4J248 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TRAV1-1A0A0B4J248 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC16.06■□□□□ 0.16
TRAV1-1A0A0B4J248 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRAV1-1A0A0B4J248 AC093484.2-201ENST00000580996 2166 ntBASIC16.06■□□□□ 0.16
TRAV1-1A0A0B4J248 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRAV1-1A0A0B4J248 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TRAV1-1A0A0B4J248 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC16.06■□□□□ 0.16
TRAV1-1A0A0B4J248 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRAV1-1A0A0B4J248 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRAV1-1A0A0B4J248 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRAV1-1A0A0B4J248 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TRAV1-1A0A0B4J248 TMEM179-206ENST00000616017 1645 ntBASIC16.06■□□□□ 0.16
TRAV1-1A0A0B4J248 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRAV1-1A0A0B4J248 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC16.06■□□□□ 0.16
TRAV1-1A0A0B4J248 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRAV1-1A0A0B4J248 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRAV1-1A0A0B4J248 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRAV1-1A0A0B4J248 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TRAV1-1A0A0B4J248 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TRAV1-1A0A0B4J248 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
TRAV1-1A0A0B4J248 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRAV1-1A0A0B4J248 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRAV1-1A0A0B4J248 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRAV1-1A0A0B4J248 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
TRAV1-1A0A0B4J248 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRAV1-1A0A0B4J248 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRAV1-1A0A0B4J248 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
TRAV1-1A0A0B4J248 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TRAV1-1A0A0B4J248 Z82202.1-201ENST00000623446 1880 ntBASIC16.05■□□□□ 0.16
TRAV1-1A0A0B4J248 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRAV1-1A0A0B4J248 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 11.6 ms