Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC23.68■■□□□ 1.38
DDX41Q9UJV9 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
DDX41Q9UJV9 AL391422.3-201ENST00000603791 2761 ntBASIC23.68■■□□□ 1.38
DDX41Q9UJV9 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
DDX41Q9UJV9 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC23.68■■□□□ 1.38
DDX41Q9UJV9 TSPY20P-201ENST00000450910 630 ntBASIC23.68■■□□□ 1.38
DDX41Q9UJV9 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC23.68■■□□□ 1.38
DDX41Q9UJV9 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC23.68■■□□□ 1.38
DDX41Q9UJV9 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
DDX41Q9UJV9 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
DDX41Q9UJV9 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC23.68■■□□□ 1.38
DDX41Q9UJV9 AC010542.4-201ENST00000563151 1910 ntBASIC23.68■■□□□ 1.38
DDX41Q9UJV9 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC23.68■■□□□ 1.38
DDX41Q9UJV9 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC23.67■■□□□ 1.38
DDX41Q9UJV9 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC23.67■■□□□ 1.38
DDX41Q9UJV9 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC23.67■■□□□ 1.38
DDX41Q9UJV9 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
DDX41Q9UJV9 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC23.67■■□□□ 1.38
DDX41Q9UJV9 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC23.67■■□□□ 1.38
DDX41Q9UJV9 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC23.67■■□□□ 1.38
DDX41Q9UJV9 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC23.67■■□□□ 1.38
DDX41Q9UJV9 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC23.67■■□□□ 1.38
DDX41Q9UJV9 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
DDX41Q9UJV9 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
DDX41Q9UJV9 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
DDX41Q9UJV9 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
DDX41Q9UJV9 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
DDX41Q9UJV9 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
DDX41Q9UJV9 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
DDX41Q9UJV9 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC23.66■■□□□ 1.38
DDX41Q9UJV9 PPP1R14BP2-201ENST00000426284 444 ntBASIC23.66■■□□□ 1.38
DDX41Q9UJV9 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC23.66■■□□□ 1.38
DDX41Q9UJV9 TMEM191A-211ENST00000637163 1067 ntBASIC23.66■■□□□ 1.38
DDX41Q9UJV9 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC23.66■■□□□ 1.38
DDX41Q9UJV9 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC23.66■■□□□ 1.38
DDX41Q9UJV9 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC23.66■■□□□ 1.38
DDX41Q9UJV9 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
DDX41Q9UJV9 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
DDX41Q9UJV9 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC23.66■■□□□ 1.38
DDX41Q9UJV9 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC23.65■■□□□ 1.38
DDX41Q9UJV9 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
DDX41Q9UJV9 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
DDX41Q9UJV9 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
DDX41Q9UJV9 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC23.65■■□□□ 1.38
DDX41Q9UJV9 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
DDX41Q9UJV9 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC23.65■■□□□ 1.38
DDX41Q9UJV9 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
DDX41Q9UJV9 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
DDX41Q9UJV9 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC23.65■■□□□ 1.38
DDX41Q9UJV9 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
DDX41Q9UJV9 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
DDX41Q9UJV9 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC23.65■■□□□ 1.38
DDX41Q9UJV9 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC23.65■■□□□ 1.38
DDX41Q9UJV9 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
DDX41Q9UJV9 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC23.64■■□□□ 1.38
DDX41Q9UJV9 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
DDX41Q9UJV9 FAM99A-202ENST00000538190 1989 ntBASIC23.64■■□□□ 1.38
DDX41Q9UJV9 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC23.64■■□□□ 1.37
DDX41Q9UJV9 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.37
DDX41Q9UJV9 RARRES2P4-201ENST00000514074 484 ntBASIC23.64■■□□□ 1.37
DDX41Q9UJV9 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC23.64■■□□□ 1.37
DDX41Q9UJV9 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC23.64■■□□□ 1.37
DDX41Q9UJV9 MIR4651-201ENST00000582622 73 ntBASIC23.64■■□□□ 1.37
DDX41Q9UJV9 AC092118.2-201ENST00000613495 667 ntBASIC23.64■■□□□ 1.37
DDX41Q9UJV9 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.37
DDX41Q9UJV9 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.37
DDX41Q9UJV9 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC23.64■■□□□ 1.37
DDX41Q9UJV9 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.37
DDX41Q9UJV9 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
DDX41Q9UJV9 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC23.64■■□□□ 1.37
DDX41Q9UJV9 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
DDX41Q9UJV9 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
DDX41Q9UJV9 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
DDX41Q9UJV9 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
DDX41Q9UJV9 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC23.63■■□□□ 1.37
DDX41Q9UJV9 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
DDX41Q9UJV9 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC23.63■■□□□ 1.37
DDX41Q9UJV9 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
DDX41Q9UJV9 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC23.63■■□□□ 1.37
DDX41Q9UJV9 CD44-222ENST00000526025 1052 ntTSL 2 BASIC23.63■■□□□ 1.37
DDX41Q9UJV9 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC23.63■■□□□ 1.37
DDX41Q9UJV9 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC23.63■■□□□ 1.37
DDX41Q9UJV9 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC23.63■■□□□ 1.37
DDX41Q9UJV9 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC23.62■■□□□ 1.37
DDX41Q9UJV9 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC23.62■■□□□ 1.37
DDX41Q9UJV9 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
DDX41Q9UJV9 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC23.62■■□□□ 1.37
DDX41Q9UJV9 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
DDX41Q9UJV9 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC23.62■■□□□ 1.37
DDX41Q9UJV9 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
DDX41Q9UJV9 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
DDX41Q9UJV9 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC23.62■■□□□ 1.37
DDX41Q9UJV9 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
DDX41Q9UJV9 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC23.61■■□□□ 1.37
DDX41Q9UJV9 AC010980.2-201ENST00000587099 1412 ntBASIC23.61■■□□□ 1.37
DDX41Q9UJV9 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
DDX41Q9UJV9 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
DDX41Q9UJV9 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC23.61■■□□□ 1.37
DDX41Q9UJV9 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
DDX41Q9UJV9 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC23.61■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms