Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VMP1Q96GC9 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VMP1Q96GC9 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VMP1Q96GC9 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
VMP1Q96GC9 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
VMP1Q96GC9 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VMP1Q96GC9 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC19.66■□□□□ 0.74
VMP1Q96GC9 AC008175.2-201ENST00000612840 297 ntBASIC19.66■□□□□ 0.74
VMP1Q96GC9 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC19.66■□□□□ 0.74
VMP1Q96GC9 BID-214ENST00000617586 542 ntTSL 5 BASIC19.66■□□□□ 0.74
VMP1Q96GC9 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VMP1Q96GC9 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
VMP1Q96GC9 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VMP1Q96GC9 AC026471.6-201ENST00000622954 1905 ntBASIC19.66■□□□□ 0.74
VMP1Q96GC9 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VMP1Q96GC9 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VMP1Q96GC9 AL391422.3-201ENST00000603791 2761 ntBASIC19.66■□□□□ 0.74
VMP1Q96GC9 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC19.66■□□□□ 0.74
VMP1Q96GC9 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VMP1Q96GC9 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC19.65■□□□□ 0.74
VMP1Q96GC9 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC19.65■□□□□ 0.74
VMP1Q96GC9 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VMP1Q96GC9 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VMP1Q96GC9 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC19.65■□□□□ 0.74
VMP1Q96GC9 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VMP1Q96GC9 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VMP1Q96GC9 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VMP1Q96GC9 DLX3-202ENST00000512495 834 ntTSL 2 BASIC19.65■□□□□ 0.74
VMP1Q96GC9 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VMP1Q96GC9 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VMP1Q96GC9 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC19.65■□□□□ 0.74
VMP1Q96GC9 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC19.65■□□□□ 0.74
VMP1Q96GC9 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC19.65■□□□□ 0.74
VMP1Q96GC9 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VMP1Q96GC9 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.65■□□□□ 0.74
VMP1Q96GC9 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC19.65■□□□□ 0.74
VMP1Q96GC9 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
VMP1Q96GC9 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
VMP1Q96GC9 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.74
VMP1Q96GC9 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
VMP1Q96GC9 AC138932.1-201ENST00000534164 6830 ntBASIC19.64■□□□□ 0.74
VMP1Q96GC9 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VMP1Q96GC9 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VMP1Q96GC9 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VMP1Q96GC9 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC19.64■□□□□ 0.73
VMP1Q96GC9 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
VMP1Q96GC9 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC19.64■□□□□ 0.73
VMP1Q96GC9 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
VMP1Q96GC9 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC19.64■□□□□ 0.73
VMP1Q96GC9 VPS53-216ENST00000574029 585 ntTSL 4 BASIC19.64■□□□□ 0.73
VMP1Q96GC9 UBE2DNL-204ENST00000602536 740 ntBASIC19.64■□□□□ 0.73
VMP1Q96GC9 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
VMP1Q96GC9 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VMP1Q96GC9 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
VMP1Q96GC9 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
VMP1Q96GC9 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VMP1Q96GC9 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC19.64■□□□□ 0.73
VMP1Q96GC9 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
VMP1Q96GC9 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VMP1Q96GC9 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
VMP1Q96GC9 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
VMP1Q96GC9 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
VMP1Q96GC9 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VMP1Q96GC9 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
VMP1Q96GC9 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
VMP1Q96GC9 PARP1-202ENST00000366792 553 ntTSL 3 BASIC19.63■□□□□ 0.73
VMP1Q96GC9 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC19.63■□□□□ 0.73
VMP1Q96GC9 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VMP1Q96GC9 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC19.63■□□□□ 0.73
VMP1Q96GC9 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC19.63■□□□□ 0.73
VMP1Q96GC9 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC19.63■□□□□ 0.73
VMP1Q96GC9 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VMP1Q96GC9 AC120498.10-201ENST00000621827 505 ntBASIC19.63■□□□□ 0.73
VMP1Q96GC9 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VMP1Q96GC9 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.63■□□□□ 0.73
VMP1Q96GC9 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC19.63■□□□□ 0.73
VMP1Q96GC9 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VMP1Q96GC9 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VMP1Q96GC9 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC19.62■□□□□ 0.73
VMP1Q96GC9 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC19.62■□□□□ 0.73
VMP1Q96GC9 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VMP1Q96GC9 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
VMP1Q96GC9 NAA20-201ENST00000310450 920 ntTSL 2 BASIC19.62■□□□□ 0.73
VMP1Q96GC9 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
VMP1Q96GC9 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC19.62■□□□□ 0.73
VMP1Q96GC9 POU5F1P4-201ENST00000413175 1085 ntBASIC19.62■□□□□ 0.73
VMP1Q96GC9 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.62■□□□□ 0.73
VMP1Q96GC9 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC19.62■□□□□ 0.73
VMP1Q96GC9 MYCNOS-205ENST00000641950 531 ntBASIC19.62■□□□□ 0.73
VMP1Q96GC9 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
VMP1Q96GC9 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC19.62■□□□□ 0.73
VMP1Q96GC9 AC244015.2-201ENST00000616358 1861 ntBASIC19.62■□□□□ 0.73
VMP1Q96GC9 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VMP1Q96GC9 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VMP1Q96GC9 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC19.61■□□□□ 0.73
VMP1Q96GC9 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC19.61■□□□□ 0.73
VMP1Q96GC9 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC19.61■□□□□ 0.73
VMP1Q96GC9 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VMP1Q96GC9 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC19.61■□□□□ 0.73
VMP1Q96GC9 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms