Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC26.97■■□□□ 1.91
RTF1Q92541 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
RTF1Q92541 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC26.97■■□□□ 1.91
RTF1Q92541 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
RTF1Q92541 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
RTF1Q92541 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC26.97■■□□□ 1.91
RTF1Q92541 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
RTF1Q92541 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
RTF1Q92541 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC26.97■■□□□ 1.91
RTF1Q92541 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC26.97■■□□□ 1.91
RTF1Q92541 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC26.97■■□□□ 1.91
RTF1Q92541 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
RTF1Q92541 TMEM191A-211ENST00000637163 1067 ntBASIC26.97■■□□□ 1.91
RTF1Q92541 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
RTF1Q92541 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC26.97■■□□□ 1.91
RTF1Q92541 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
RTF1Q92541 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC26.97■■□□□ 1.91
RTF1Q92541 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
RTF1Q92541 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
RTF1Q92541 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
RTF1Q92541 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
RTF1Q92541 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC26.96■■□□□ 1.91
RTF1Q92541 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC26.96■■□□□ 1.91
RTF1Q92541 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC26.96■■□□□ 1.91
RTF1Q92541 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
RTF1Q92541 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
RTF1Q92541 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC26.96■■□□□ 1.91
RTF1Q92541 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC26.96■■□□□ 1.91
RTF1Q92541 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
RTF1Q92541 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC26.96■■□□□ 1.91
RTF1Q92541 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
RTF1Q92541 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC26.96■■□□□ 1.91
RTF1Q92541 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.91
RTF1Q92541 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.91
RTF1Q92541 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
RTF1Q92541 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
RTF1Q92541 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC26.95■■□□□ 1.9
RTF1Q92541 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC26.95■■□□□ 1.9
RTF1Q92541 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC26.95■■□□□ 1.9
RTF1Q92541 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
RTF1Q92541 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC26.95■■□□□ 1.9
RTF1Q92541 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC26.95■■□□□ 1.9
RTF1Q92541 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
RTF1Q92541 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
RTF1Q92541 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC26.94■■□□□ 1.9
RTF1Q92541 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC26.94■■□□□ 1.9
RTF1Q92541 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
RTF1Q92541 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC26.94■■□□□ 1.9
RTF1Q92541 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC26.94■■□□□ 1.9
RTF1Q92541 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC26.94■■□□□ 1.9
RTF1Q92541 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC26.94■■□□□ 1.9
RTF1Q92541 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
RTF1Q92541 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
RTF1Q92541 NME6-213ENST00000451657 871 ntTSL 2 BASIC26.94■■□□□ 1.9
RTF1Q92541 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC26.94■■□□□ 1.9
RTF1Q92541 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC26.94■■□□□ 1.9
RTF1Q92541 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
RTF1Q92541 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
RTF1Q92541 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC26.93■■□□□ 1.9
RTF1Q92541 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
RTF1Q92541 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
RTF1Q92541 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC26.93■■□□□ 1.9
RTF1Q92541 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC26.93■■□□□ 1.9
RTF1Q92541 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
RTF1Q92541 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC26.93■■□□□ 1.9
RTF1Q92541 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC26.93■■□□□ 1.9
RTF1Q92541 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC26.93■■□□□ 1.9
RTF1Q92541 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC26.93■■□□□ 1.9
RTF1Q92541 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC26.93■■□□□ 1.9
RTF1Q92541 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC26.92■■□□□ 1.9
RTF1Q92541 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
RTF1Q92541 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC26.92■■□□□ 1.9
RTF1Q92541 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC26.92■■□□□ 1.9
RTF1Q92541 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
RTF1Q92541 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC26.92■■□□□ 1.9
RTF1Q92541 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
RTF1Q92541 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
RTF1Q92541 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
RTF1Q92541 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC26.92■■□□□ 1.9
RTF1Q92541 GATS-209ENST00000454084 1030 ntTSL 3 BASIC26.92■■□□□ 1.9
RTF1Q92541 INO80E-214ENST00000620599 515 ntTSL 2 BASIC26.92■■□□□ 1.9
RTF1Q92541 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
RTF1Q92541 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC26.91■■□□□ 1.9
RTF1Q92541 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
RTF1Q92541 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
RTF1Q92541 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
RTF1Q92541 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC26.91■■□□□ 1.9
RTF1Q92541 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
RTF1Q92541 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC26.91■■□□□ 1.9
RTF1Q92541 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
RTF1Q92541 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC26.91■■□□□ 1.9
RTF1Q92541 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC26.91■■□□□ 1.9
RTF1Q92541 POU5F1P3-201ENST00000428824 1078 ntBASIC26.91■■□□□ 1.9
RTF1Q92541 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
RTF1Q92541 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
RTF1Q92541 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC26.91■■□□□ 1.9
RTF1Q92541 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC26.91■■□□□ 1.9
RTF1Q92541 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC26.91■■□□□ 1.9
RTF1Q92541 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
RTF1Q92541 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC26.91■■□□□ 1.9
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms