Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HLA-DMBP28068 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC15.68■□□□□ 0.1
HLA-DMBP28068 PLD4-205ENST00000553861 667 ntTSL 2 BASIC15.68■□□□□ 0.1
HLA-DMBP28068 EEF1DP3-203ENST00000566025 782 ntBASIC15.68■□□□□ 0.1
HLA-DMBP28068 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC15.68■□□□□ 0.1
HLA-DMBP28068 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HLA-DMBP28068 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HLA-DMBP28068 AC007225.1-201ENST00000566331 1836 ntBASIC15.68■□□□□ 0.1
HLA-DMBP28068 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC15.68■□□□□ 0.1
HLA-DMBP28068 FP700111.2-201ENST00000619190 1892 ntBASIC15.67■□□□□ 0.1
HLA-DMBP28068 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC15.67■□□□□ 0.1
HLA-DMBP28068 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
HLA-DMBP28068 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HLA-DMBP28068 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC15.67■□□□□ 0.1
HLA-DMBP28068 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
HLA-DMBP28068 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HLA-DMBP28068 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC15.67■□□□□ 0.1
HLA-DMBP28068 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
HLA-DMBP28068 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC15.67■□□□□ 0.1
HLA-DMBP28068 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC15.67■□□□□ 0.1
HLA-DMBP28068 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC15.67■□□□□ 0.1
HLA-DMBP28068 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC15.67■□□□□ 0.1
HLA-DMBP28068 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC15.67■□□□□ 0.1
HLA-DMBP28068 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC15.67■□□□□ 0.1
HLA-DMBP28068 ANKRD20A6P-201ENST00000618763 204 ntBASIC15.67■□□□□ 0.1
HLA-DMBP28068 AL358852.1-201ENST00000623174 1268 ntBASIC15.67■□□□□ 0.1
HLA-DMBP28068 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
HLA-DMBP28068 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
HLA-DMBP28068 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC15.67■□□□□ 0.1
HLA-DMBP28068 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC15.67■□□□□ 0.1
HLA-DMBP28068 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
HLA-DMBP28068 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HLA-DMBP28068 MFF-207ENST00000409565 1548 ntTSL 2 BASIC15.67■□□□□ 0.1
HLA-DMBP28068 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HLA-DMBP28068 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
HLA-DMBP28068 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
HLA-DMBP28068 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HLA-DMBP28068 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
HLA-DMBP28068 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HLA-DMBP28068 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
HLA-DMBP28068 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HLA-DMBP28068 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HLA-DMBP28068 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HLA-DMBP28068 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC15.66■□□□□ 0.1
HLA-DMBP28068 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC15.66■□□□□ 0.1
HLA-DMBP28068 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HLA-DMBP28068 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC15.66■□□□□ 0.1
HLA-DMBP28068 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HLA-DMBP28068 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HLA-DMBP28068 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HLA-DMBP28068 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HLA-DMBP28068 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC15.66■□□□□ 0.1
HLA-DMBP28068 TPRG1LP1-201ENST00000598702 760 ntBASIC15.66■□□□□ 0.1
HLA-DMBP28068 AC053503.5-201ENST00000601508 636 ntBASIC15.66■□□□□ 0.1
HLA-DMBP28068 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC15.66■□□□□ 0.1
HLA-DMBP28068 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC15.66■□□□□ 0.1
HLA-DMBP28068 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC15.66■□□□□ 0.1
HLA-DMBP28068 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC15.66■□□□□ 0.1
HLA-DMBP28068 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HLA-DMBP28068 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HLA-DMBP28068 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
HLA-DMBP28068 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
HLA-DMBP28068 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HLA-DMBP28068 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
HLA-DMBP28068 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
HLA-DMBP28068 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC15.65■□□□□ 0.1
HLA-DMBP28068 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HLA-DMBP28068 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC15.65■□□□□ 0.1
HLA-DMBP28068 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HLA-DMBP28068 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC15.65■□□□□ 0.1
HLA-DMBP28068 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC15.65■□□□□ 0.1
HLA-DMBP28068 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HLA-DMBP28068 AC092666.2-201ENST00000613287 246 ntBASIC15.65■□□□□ 0.1
HLA-DMBP28068 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HLA-DMBP28068 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HLA-DMBP28068 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
HLA-DMBP28068 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC15.65■□□□□ 0.1
HLA-DMBP28068 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC15.65■□□□□ 0.1
HLA-DMBP28068 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC15.65■□□□□ 0.1
HLA-DMBP28068 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC15.65■□□□□ 0.1
HLA-DMBP28068 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HLA-DMBP28068 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC15.65■□□□□ 0.1
HLA-DMBP28068 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
HLA-DMBP28068 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
HLA-DMBP28068 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
HLA-DMBP28068 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.1
HLA-DMBP28068 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC15.64■□□□□ 0.1
HLA-DMBP28068 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC15.64■□□□□ 0.09
HLA-DMBP28068 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HLA-DMBP28068 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC15.64■□□□□ 0.09
HLA-DMBP28068 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC15.64■□□□□ 0.09
HLA-DMBP28068 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC15.64■□□□□ 0.09
HLA-DMBP28068 BID-203ENST00000399765 1879 ntTSL 2 BASIC15.64■□□□□ 0.09
HLA-DMBP28068 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
HLA-DMBP28068 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC15.64■□□□□ 0.09
HLA-DMBP28068 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC15.64■□□□□ 0.09
HLA-DMBP28068 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC15.64■□□□□ 0.09
HLA-DMBP28068 AL354811.1-201ENST00000610286 706 ntBASIC15.64■□□□□ 0.09
HLA-DMBP28068 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC15.64■□□□□ 0.09
HLA-DMBP28068 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms