Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SSX4O60224 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
SSX4O60224 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SSX4O60224 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
SSX4O60224 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
SSX4O60224 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC18.61■□□□□ 0.57
SSX4O60224 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC18.61■□□□□ 0.57
SSX4O60224 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC18.61■□□□□ 0.57
SSX4O60224 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SSX4O60224 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
SSX4O60224 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SSX4O60224 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SSX4O60224 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
SSX4O60224 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC18.61■□□□□ 0.57
SSX4O60224 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SSX4O60224 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC18.61■□□□□ 0.57
SSX4O60224 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SSX4O60224 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
SSX4O60224 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
SSX4O60224 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC18.61■□□□□ 0.57
SSX4O60224 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SSX4O60224 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC18.6■□□□□ 0.57
SSX4O60224 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SSX4O60224 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SSX4O60224 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
SSX4O60224 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
SSX4O60224 MFF-208ENST00000409616 1247 ntTSL 5 BASIC18.6■□□□□ 0.57
SSX4O60224 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC18.6■□□□□ 0.57
SSX4O60224 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC18.6■□□□□ 0.57
SSX4O60224 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC18.6■□□□□ 0.57
SSX4O60224 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC18.6■□□□□ 0.57
SSX4O60224 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
SSX4O60224 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SSX4O60224 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SSX4O60224 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC18.6■□□□□ 0.57
SSX4O60224 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
SSX4O60224 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SSX4O60224 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SSX4O60224 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SSX4O60224 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
SSX4O60224 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC18.59■□□□□ 0.57
SSX4O60224 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SSX4O60224 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SSX4O60224 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC18.59■□□□□ 0.57
SSX4O60224 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC18.59■□□□□ 0.57
SSX4O60224 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
SSX4O60224 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SSX4O60224 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC18.59■□□□□ 0.57
SSX4O60224 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC18.59■□□□□ 0.57
SSX4O60224 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC18.59■□□□□ 0.57
SSX4O60224 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC18.59■□□□□ 0.57
SSX4O60224 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC18.59■□□□□ 0.57
SSX4O60224 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SSX4O60224 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SSX4O60224 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SSX4O60224 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SSX4O60224 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC18.58■□□□□ 0.57
SSX4O60224 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
SSX4O60224 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SSX4O60224 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC18.58■□□□□ 0.57
SSX4O60224 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SSX4O60224 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC18.58■□□□□ 0.57
SSX4O60224 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SSX4O60224 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SSX4O60224 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SSX4O60224 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC18.58■□□□□ 0.56
SSX4O60224 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
SSX4O60224 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SSX4O60224 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC18.58■□□□□ 0.56
SSX4O60224 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC18.58■□□□□ 0.56
SSX4O60224 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
SSX4O60224 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC18.58■□□□□ 0.56
SSX4O60224 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SSX4O60224 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
SSX4O60224 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SSX4O60224 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC18.57■□□□□ 0.56
SSX4O60224 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC18.57■□□□□ 0.56
SSX4O60224 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SSX4O60224 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SSX4O60224 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SSX4O60224 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SSX4O60224 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SSX4O60224 AC004687.1-201ENST00000579003 1625 ntBASIC18.57■□□□□ 0.56
SSX4O60224 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SSX4O60224 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SSX4O60224 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
SSX4O60224 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SSX4O60224 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SSX4O60224 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC18.57■□□□□ 0.56
SSX4O60224 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SSX4O60224 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SSX4O60224 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC18.57■□□□□ 0.56
SSX4O60224 VPS53-216ENST00000574029 585 ntTSL 4 BASIC18.57■□□□□ 0.56
SSX4O60224 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SSX4O60224 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SSX4O60224 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SSX4O60224 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC18.57■□□□□ 0.56
SSX4O60224 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SSX4O60224 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SSX4O60224 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms