Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
SMIM28A0A1B0GU29 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
SMIM28A0A1B0GU29 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
SMIM28A0A1B0GU29 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
SMIM28A0A1B0GU29 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
SMIM28A0A1B0GU29 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC22.21■■□□□ 1.15
SMIM28A0A1B0GU29 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC22.21■■□□□ 1.15
SMIM28A0A1B0GU29 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
SMIM28A0A1B0GU29 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC22.21■■□□□ 1.15
SMIM28A0A1B0GU29 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC22.21■■□□□ 1.15
SMIM28A0A1B0GU29 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC22.21■■□□□ 1.15
SMIM28A0A1B0GU29 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
SMIM28A0A1B0GU29 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC22.21■■□□□ 1.15
SMIM28A0A1B0GU29 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC22.21■■□□□ 1.15
SMIM28A0A1B0GU29 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
SMIM28A0A1B0GU29 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC22.21■■□□□ 1.15
SMIM28A0A1B0GU29 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
SMIM28A0A1B0GU29 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
SMIM28A0A1B0GU29 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC22.21■■□□□ 1.15
SMIM28A0A1B0GU29 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC22.21■■□□□ 1.15
SMIM28A0A1B0GU29 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
SMIM28A0A1B0GU29 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
SMIM28A0A1B0GU29 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
SMIM28A0A1B0GU29 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
SMIM28A0A1B0GU29 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
SMIM28A0A1B0GU29 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
SMIM28A0A1B0GU29 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
SMIM28A0A1B0GU29 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC22.21■■□□□ 1.15
SMIM28A0A1B0GU29 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
SMIM28A0A1B0GU29 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC22.21■■□□□ 1.15
SMIM28A0A1B0GU29 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
SMIM28A0A1B0GU29 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
SMIM28A0A1B0GU29 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC22.2■■□□□ 1.14
SMIM28A0A1B0GU29 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC22.2■■□□□ 1.14
SMIM28A0A1B0GU29 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC22.2■■□□□ 1.14
SMIM28A0A1B0GU29 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.14
SMIM28A0A1B0GU29 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC22.2■■□□□ 1.14
SMIM28A0A1B0GU29 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC22.2■■□□□ 1.14
SMIM28A0A1B0GU29 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC22.2■■□□□ 1.14
SMIM28A0A1B0GU29 LINC00565-201ENST00000562710 2331 ntBASIC22.2■■□□□ 1.14
SMIM28A0A1B0GU29 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
SMIM28A0A1B0GU29 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
SMIM28A0A1B0GU29 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC22.2■■□□□ 1.14
SMIM28A0A1B0GU29 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
SMIM28A0A1B0GU29 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
SMIM28A0A1B0GU29 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC22.19■■□□□ 1.14
SMIM28A0A1B0GU29 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC22.19■■□□□ 1.14
SMIM28A0A1B0GU29 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
SMIM28A0A1B0GU29 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
SMIM28A0A1B0GU29 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC22.19■■□□□ 1.14
SMIM28A0A1B0GU29 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC22.19■■□□□ 1.14
SMIM28A0A1B0GU29 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC22.19■■□□□ 1.14
SMIM28A0A1B0GU29 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC22.19■■□□□ 1.14
SMIM28A0A1B0GU29 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC22.19■■□□□ 1.14
SMIM28A0A1B0GU29 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC22.19■■□□□ 1.14
SMIM28A0A1B0GU29 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
SMIM28A0A1B0GU29 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC22.19■■□□□ 1.14
SMIM28A0A1B0GU29 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC22.19■■□□□ 1.14
SMIM28A0A1B0GU29 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC22.19■■□□□ 1.14
SMIM28A0A1B0GU29 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
SMIM28A0A1B0GU29 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC22.19■■□□□ 1.14
SMIM28A0A1B0GU29 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC22.18■■□□□ 1.14
SMIM28A0A1B0GU29 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC22.18■■□□□ 1.14
SMIM28A0A1B0GU29 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
SMIM28A0A1B0GU29 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
SMIM28A0A1B0GU29 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC22.18■■□□□ 1.14
SMIM28A0A1B0GU29 NME6-213ENST00000451657 871 ntTSL 2 BASIC22.18■■□□□ 1.14
SMIM28A0A1B0GU29 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC22.18■■□□□ 1.14
SMIM28A0A1B0GU29 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
SMIM28A0A1B0GU29 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
SMIM28A0A1B0GU29 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
SMIM28A0A1B0GU29 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
SMIM28A0A1B0GU29 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC22.17■■□□□ 1.14
SMIM28A0A1B0GU29 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
SMIM28A0A1B0GU29 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC22.17■■□□□ 1.14
SMIM28A0A1B0GU29 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
SMIM28A0A1B0GU29 GATS-209ENST00000454084 1030 ntTSL 3 BASIC22.17■■□□□ 1.14
SMIM28A0A1B0GU29 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC22.17■■□□□ 1.14
SMIM28A0A1B0GU29 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
SMIM28A0A1B0GU29 AC011484.1-201ENST00000377652 1995 ntBASIC22.17■■□□□ 1.14
SMIM28A0A1B0GU29 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
SMIM28A0A1B0GU29 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC22.17■■□□□ 1.14
SMIM28A0A1B0GU29 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
SMIM28A0A1B0GU29 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC22.17■■□□□ 1.14
SMIM28A0A1B0GU29 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC22.16■■□□□ 1.14
SMIM28A0A1B0GU29 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
SMIM28A0A1B0GU29 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
SMIM28A0A1B0GU29 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC22.16■■□□□ 1.14
SMIM28A0A1B0GU29 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
SMIM28A0A1B0GU29 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC22.16■■□□□ 1.14
SMIM28A0A1B0GU29 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
SMIM28A0A1B0GU29 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC22.16■■□□□ 1.14
SMIM28A0A1B0GU29 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
SMIM28A0A1B0GU29 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
SMIM28A0A1B0GU29 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
SMIM28A0A1B0GU29 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC22.16■■□□□ 1.14
SMIM28A0A1B0GU29 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC22.16■■□□□ 1.14
SMIM28A0A1B0GU29 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC22.16■■□□□ 1.14
SMIM28A0A1B0GU29 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC22.16■■□□□ 1.14
SMIM28A0A1B0GU29 AL049796.1-201ENST00000565336 1766 ntBASIC22.16■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms