Protein–RNA interactions for Protein: Q9H211

CDT1, DNA replication factor Cdt1, humanhuman

Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDT1Q9H211 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
CDT1Q9H211 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC22.48■■□□□ 1.19
CDT1Q9H211 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC22.48■■□□□ 1.19
CDT1Q9H211 MIR4758-201ENST00000577688 71 ntBASIC22.48■■□□□ 1.19
CDT1Q9H211 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC22.48■■□□□ 1.19
CDT1Q9H211 AC100791.3-201ENST00000617619 330 ntBASIC22.48■■□□□ 1.19
CDT1Q9H211 FEM1AP4-201ENST00000443167 1987 ntBASIC22.48■■□□□ 1.19
CDT1Q9H211 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC22.48■■□□□ 1.19
CDT1Q9H211 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC22.48■■□□□ 1.19
CDT1Q9H211 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC22.48■■□□□ 1.19
CDT1Q9H211 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
CDT1Q9H211 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
CDT1Q9H211 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
CDT1Q9H211 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
CDT1Q9H211 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
CDT1Q9H211 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
CDT1Q9H211 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC22.47■■□□□ 1.19
CDT1Q9H211 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC22.47■■□□□ 1.19
CDT1Q9H211 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC22.47■■□□□ 1.19
CDT1Q9H211 PPP1R14BP2-201ENST00000426284 444 ntBASIC22.47■■□□□ 1.19
CDT1Q9H211 AC073210.2-201ENST00000430369 194 ntBASIC22.47■■□□□ 1.19
CDT1Q9H211 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC22.47■■□□□ 1.19
CDT1Q9H211 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC22.47■■□□□ 1.19
CDT1Q9H211 KLF13-207ENST00000560473 489 ntTSL 3 BASIC22.47■■□□□ 1.19
CDT1Q9H211 AC092118.2-201ENST00000613495 667 ntBASIC22.47■■□□□ 1.19
CDT1Q9H211 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
CDT1Q9H211 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
CDT1Q9H211 AL049796.1-201ENST00000565336 1766 ntBASIC22.47■■□□□ 1.19
CDT1Q9H211 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC22.47■■□□□ 1.19
CDT1Q9H211 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC22.47■■□□□ 1.19
CDT1Q9H211 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
CDT1Q9H211 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC22.47■■□□□ 1.19
CDT1Q9H211 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC22.47■■□□□ 1.19
CDT1Q9H211 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC22.47■■□□□ 1.19
CDT1Q9H211 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC22.47■■□□□ 1.19
CDT1Q9H211 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
CDT1Q9H211 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
CDT1Q9H211 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
CDT1Q9H211 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
CDT1Q9H211 CYP2T3P-201ENST00000601990 817 ntBASIC22.46■■□□□ 1.19
CDT1Q9H211 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC22.46■■□□□ 1.19
CDT1Q9H211 AC133041.1-202ENST00000642053 222 ntBASIC22.46■■□□□ 1.19
CDT1Q9H211 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC22.46■■□□□ 1.19
CDT1Q9H211 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC22.46■■□□□ 1.19
CDT1Q9H211 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
CDT1Q9H211 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC22.46■■□□□ 1.19
CDT1Q9H211 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC22.46■■□□□ 1.19
CDT1Q9H211 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC22.46■■□□□ 1.19
CDT1Q9H211 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC22.45■■□□□ 1.19
CDT1Q9H211 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
CDT1Q9H211 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
CDT1Q9H211 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC22.45■■□□□ 1.18
CDT1Q9H211 MCRIP2P1-201ENST00000394346 511 ntBASIC22.45■■□□□ 1.18
CDT1Q9H211 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC22.45■■□□□ 1.18
CDT1Q9H211 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC22.45■■□□□ 1.18
CDT1Q9H211 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
CDT1Q9H211 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC22.45■■□□□ 1.18
CDT1Q9H211 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC22.45■■□□□ 1.18
CDT1Q9H211 CYP21A1P-202ENST00000354927 1481 ntBASIC22.45■■□□□ 1.18
CDT1Q9H211 KRT17P1-201ENST00000399211 1546 ntBASIC22.45■■□□□ 1.18
CDT1Q9H211 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
CDT1Q9H211 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.18
CDT1Q9H211 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC22.45■■□□□ 1.18
CDT1Q9H211 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC22.44■■□□□ 1.18
CDT1Q9H211 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
CDT1Q9H211 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
CDT1Q9H211 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
CDT1Q9H211 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC22.44■■□□□ 1.18
CDT1Q9H211 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
CDT1Q9H211 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC22.44■■□□□ 1.18
CDT1Q9H211 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
CDT1Q9H211 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC22.44■■□□□ 1.18
CDT1Q9H211 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
CDT1Q9H211 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC22.44■■□□□ 1.18
CDT1Q9H211 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC22.44■■□□□ 1.18
CDT1Q9H211 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC22.44■■□□□ 1.18
CDT1Q9H211 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC22.44■■□□□ 1.18
CDT1Q9H211 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC22.44■■□□□ 1.18
CDT1Q9H211 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC22.44■■□□□ 1.18
CDT1Q9H211 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC22.44■■□□□ 1.18
CDT1Q9H211 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC22.44■■□□□ 1.18
CDT1Q9H211 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC22.44■■□□□ 1.18
CDT1Q9H211 AF106564.1-201ENST00000607058 2553 ntBASIC22.44■■□□□ 1.18
CDT1Q9H211 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CDT1Q9H211 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC22.43■■□□□ 1.18
CDT1Q9H211 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
CDT1Q9H211 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
CDT1Q9H211 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC22.43■■□□□ 1.18
CDT1Q9H211 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
CDT1Q9H211 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC22.43■■□□□ 1.18
CDT1Q9H211 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CDT1Q9H211 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CDT1Q9H211 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
CDT1Q9H211 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CDT1Q9H211 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CDT1Q9H211 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC22.43■■□□□ 1.18
CDT1Q9H211 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
CDT1Q9H211 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC22.43■■□□□ 1.18
CDT1Q9H211 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC22.43■■□□□ 1.18
CDT1Q9H211 AC026310.3-201ENST00000625186 2373 ntBASIC22.43■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 13.3 ms