Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC21.15■□□□□ 0.98
SKA1Q96BD8 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
SKA1Q96BD8 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
SKA1Q96BD8 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
SKA1Q96BD8 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
SKA1Q96BD8 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
SKA1Q96BD8 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC21.14■□□□□ 0.97
SKA1Q96BD8 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC21.14■□□□□ 0.97
SKA1Q96BD8 AF201337.1-201ENST00000520239 748 ntBASIC21.14■□□□□ 0.97
SKA1Q96BD8 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
SKA1Q96BD8 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC21.14■□□□□ 0.97
SKA1Q96BD8 AL050303.2-201ENST00000619798 666 ntBASIC21.14■□□□□ 0.97
SKA1Q96BD8 AC010536.3-201ENST00000620306 533 ntBASIC21.14■□□□□ 0.97
SKA1Q96BD8 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC21.14■□□□□ 0.97
SKA1Q96BD8 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SKA1Q96BD8 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SKA1Q96BD8 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
SKA1Q96BD8 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC21.14■□□□□ 0.97
SKA1Q96BD8 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SKA1Q96BD8 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SKA1Q96BD8 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SKA1Q96BD8 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SKA1Q96BD8 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC21.13■□□□□ 0.97
SKA1Q96BD8 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SKA1Q96BD8 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
SKA1Q96BD8 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SKA1Q96BD8 ABHD17AP1-201ENST00000358206 933 ntBASIC21.13■□□□□ 0.97
SKA1Q96BD8 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SKA1Q96BD8 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC21.13■□□□□ 0.97
SKA1Q96BD8 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC21.13■□□□□ 0.97
SKA1Q96BD8 SLC7A5P1-201ENST00000568957 537 ntBASIC21.13■□□□□ 0.97
SKA1Q96BD8 TMEM191A-211ENST00000637163 1067 ntBASIC21.13■□□□□ 0.97
SKA1Q96BD8 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
SKA1Q96BD8 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC21.13■□□□□ 0.97
SKA1Q96BD8 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SKA1Q96BD8 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC21.13■□□□□ 0.97
SKA1Q96BD8 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC21.13■□□□□ 0.97
SKA1Q96BD8 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC21.12■□□□□ 0.97
SKA1Q96BD8 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC21.12■□□□□ 0.97
SKA1Q96BD8 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC21.12■□□□□ 0.97
SKA1Q96BD8 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SKA1Q96BD8 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SKA1Q96BD8 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SKA1Q96BD8 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
SKA1Q96BD8 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC21.12■□□□□ 0.97
SKA1Q96BD8 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SKA1Q96BD8 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SKA1Q96BD8 METTL15-202ENST00000403099 795 ntTSL 5 BASIC21.12■□□□□ 0.97
SKA1Q96BD8 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
SKA1Q96BD8 SLC7A5P2-201ENST00000553010 536 ntBASIC21.12■□□□□ 0.97
SKA1Q96BD8 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC21.12■□□□□ 0.97
SKA1Q96BD8 AC120498.10-201ENST00000621827 505 ntBASIC21.12■□□□□ 0.97
SKA1Q96BD8 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
SKA1Q96BD8 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SKA1Q96BD8 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SKA1Q96BD8 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SKA1Q96BD8 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SKA1Q96BD8 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SKA1Q96BD8 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SKA1Q96BD8 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SKA1Q96BD8 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SKA1Q96BD8 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC21.12■□□□□ 0.97
SKA1Q96BD8 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SKA1Q96BD8 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SKA1Q96BD8 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SKA1Q96BD8 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
SKA1Q96BD8 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC21.11■□□□□ 0.97
SKA1Q96BD8 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC21.11■□□□□ 0.97
SKA1Q96BD8 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
SKA1Q96BD8 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC21.11■□□□□ 0.97
SKA1Q96BD8 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC21.11■□□□□ 0.97
SKA1Q96BD8 AC133552.2-202ENST00000575694 574 ntBASIC21.11■□□□□ 0.97
SKA1Q96BD8 AC013268.1-206ENST00000638368 961 ntBASIC21.11■□□□□ 0.97
SKA1Q96BD8 AC112229.1-201ENST00000639295 961 ntBASIC21.11■□□□□ 0.97
SKA1Q96BD8 AC133041.1-202ENST00000642053 222 ntBASIC21.11■□□□□ 0.97
SKA1Q96BD8 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
SKA1Q96BD8 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC21.11■□□□□ 0.97
SKA1Q96BD8 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SKA1Q96BD8 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SKA1Q96BD8 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC21.1■□□□□ 0.97
SKA1Q96BD8 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SKA1Q96BD8 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC21.1■□□□□ 0.97
SKA1Q96BD8 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SKA1Q96BD8 AC053503.5-201ENST00000601508 636 ntBASIC21.1■□□□□ 0.97
SKA1Q96BD8 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
SKA1Q96BD8 GAMT-205ENST00000640762 751 ntTSL 5 BASIC21.1■□□□□ 0.97
SKA1Q96BD8 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SKA1Q96BD8 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SKA1Q96BD8 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
SKA1Q96BD8 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC21.1■□□□□ 0.97
SKA1Q96BD8 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SKA1Q96BD8 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC21.09■□□□□ 0.97
SKA1Q96BD8 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC21.09■□□□□ 0.97
SKA1Q96BD8 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC21.09■□□□□ 0.97
SKA1Q96BD8 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC21.09■□□□□ 0.97
SKA1Q96BD8 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC21.09■□□□□ 0.97
SKA1Q96BD8 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC21.09■□□□□ 0.97
SKA1Q96BD8 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
SKA1Q96BD8 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SKA1Q96BD8 BET1L-204ENST00000410108 637 ntTSL 3 BASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 64.9 ms