Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 AL354811.1-201ENST00000610286 706 ntBASIC21.43■■□□□ 1.02
ATG4AQ8WYN0 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
ATG4AQ8WYN0 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
ATG4AQ8WYN0 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC21.43■■□□□ 1.02
ATG4AQ8WYN0 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
ATG4AQ8WYN0 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
ATG4AQ8WYN0 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
ATG4AQ8WYN0 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC21.43■■□□□ 1.02
ATG4AQ8WYN0 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC21.43■■□□□ 1.02
ATG4AQ8WYN0 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC21.43■■□□□ 1.02
ATG4AQ8WYN0 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC21.43■■□□□ 1.02
ATG4AQ8WYN0 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
ATG4AQ8WYN0 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
ATG4AQ8WYN0 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
ATG4AQ8WYN0 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
ATG4AQ8WYN0 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
ATG4AQ8WYN0 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
ATG4AQ8WYN0 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
ATG4AQ8WYN0 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC21.42■■□□□ 1.02
ATG4AQ8WYN0 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
ATG4AQ8WYN0 MTURN-203ENST00000409688 843 ntTSL 2 BASIC21.42■■□□□ 1.02
ATG4AQ8WYN0 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC21.42■■□□□ 1.02
ATG4AQ8WYN0 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC21.42■■□□□ 1.02
ATG4AQ8WYN0 DET1-207ENST00000564406 2315 ntTSL 2 BASIC21.42■■□□□ 1.02
ATG4AQ8WYN0 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC21.42■■□□□ 1.02
ATG4AQ8WYN0 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
ATG4AQ8WYN0 AC112907.3-201ENST00000577781 2400 ntBASIC21.41■■□□□ 1.02
ATG4AQ8WYN0 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
ATG4AQ8WYN0 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
ATG4AQ8WYN0 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC21.41■■□□□ 1.02
ATG4AQ8WYN0 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
ATG4AQ8WYN0 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC21.41■■□□□ 1.02
ATG4AQ8WYN0 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC21.41■■□□□ 1.02
ATG4AQ8WYN0 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC21.41■■□□□ 1.02
ATG4AQ8WYN0 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
ATG4AQ8WYN0 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
ATG4AQ8WYN0 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
ATG4AQ8WYN0 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
ATG4AQ8WYN0 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
ATG4AQ8WYN0 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
ATG4AQ8WYN0 RHOF-204ENST00000537265 699 ntTSL 2 BASIC21.41■■□□□ 1.02
ATG4AQ8WYN0 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
ATG4AQ8WYN0 CPT2-209ENST00000636935 803 ntTSL 5 BASIC21.41■■□□□ 1.02
ATG4AQ8WYN0 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC21.41■■□□□ 1.02
ATG4AQ8WYN0 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
ATG4AQ8WYN0 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC21.41■■□□□ 1.02
ATG4AQ8WYN0 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
ATG4AQ8WYN0 AC011484.1-201ENST00000377652 1995 ntBASIC21.41■■□□□ 1.02
ATG4AQ8WYN0 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC21.41■■□□□ 1.02
ATG4AQ8WYN0 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
ATG4AQ8WYN0 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC21.41■■□□□ 1.02
ATG4AQ8WYN0 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
ATG4AQ8WYN0 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
ATG4AQ8WYN0 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
ATG4AQ8WYN0 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
ATG4AQ8WYN0 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC21.4■■□□□ 1.02
ATG4AQ8WYN0 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC21.4■■□□□ 1.02
ATG4AQ8WYN0 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC21.4■■□□□ 1.02
ATG4AQ8WYN0 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
ATG4AQ8WYN0 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
ATG4AQ8WYN0 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
ATG4AQ8WYN0 AFG3L1P-217ENST00000557444 2447 ntBASIC21.4■■□□□ 1.02
ATG4AQ8WYN0 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
ATG4AQ8WYN0 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
ATG4AQ8WYN0 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
ATG4AQ8WYN0 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
ATG4AQ8WYN0 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
ATG4AQ8WYN0 AL512408.1-201ENST00000569378 2000 ntBASIC21.39■■□□□ 1.02
ATG4AQ8WYN0 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
ATG4AQ8WYN0 ME2-218ENST00000640965 2476 ntTSL 5 BASIC21.39■■□□□ 1.02
ATG4AQ8WYN0 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC21.39■■□□□ 1.02
ATG4AQ8WYN0 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.02
ATG4AQ8WYN0 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
ATG4AQ8WYN0 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.02
ATG4AQ8WYN0 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
ATG4AQ8WYN0 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC21.39■■□□□ 1.01
ATG4AQ8WYN0 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.01
ATG4AQ8WYN0 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC21.39■■□□□ 1.01
ATG4AQ8WYN0 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
ATG4AQ8WYN0 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC21.39■■□□□ 1.01
ATG4AQ8WYN0 AL139246.5-201ENST00000606645 996 ntBASIC21.39■■□□□ 1.01
ATG4AQ8WYN0 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
ATG4AQ8WYN0 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
ATG4AQ8WYN0 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC21.39■■□□□ 1.01
ATG4AQ8WYN0 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
ATG4AQ8WYN0 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
ATG4AQ8WYN0 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
ATG4AQ8WYN0 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
ATG4AQ8WYN0 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC21.38■■□□□ 1.01
ATG4AQ8WYN0 AC142381.2-201ENST00000566120 298 ntBASIC21.38■■□□□ 1.01
ATG4AQ8WYN0 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
ATG4AQ8WYN0 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC21.38■■□□□ 1.01
ATG4AQ8WYN0 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
ATG4AQ8WYN0 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC21.38■■□□□ 1.01
ATG4AQ8WYN0 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
ATG4AQ8WYN0 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
ATG4AQ8WYN0 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC21.37■■□□□ 1.01
ATG4AQ8WYN0 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
ATG4AQ8WYN0 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
ATG4AQ8WYN0 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms