Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC22.69■■□□□ 1.22
CCDC40Q4G0X9 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC22.69■■□□□ 1.22
CCDC40Q4G0X9 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
CCDC40Q4G0X9 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC22.69■■□□□ 1.22
CCDC40Q4G0X9 COX20-201ENST00000366528 568 ntTSL 2 BASIC22.69■■□□□ 1.22
CCDC40Q4G0X9 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
CCDC40Q4G0X9 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC22.69■■□□□ 1.22
CCDC40Q4G0X9 DUX4L2-201ENST00000561772 1275 ntBASIC22.69■■□□□ 1.22
CCDC40Q4G0X9 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
CCDC40Q4G0X9 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC22.69■■□□□ 1.22
CCDC40Q4G0X9 DUX4L6-201ENST00000626483 1275 ntBASIC22.69■■□□□ 1.22
CCDC40Q4G0X9 DUX4L1-201ENST00000627662 1275 ntBASIC22.69■■□□□ 1.22
CCDC40Q4G0X9 DUX4L8-201ENST00000629013 1275 ntBASIC22.69■■□□□ 1.22
CCDC40Q4G0X9 DUX4L3-201ENST00000630187 1275 ntBASIC22.69■■□□□ 1.22
CCDC40Q4G0X9 DUX4L7-201ENST00000630678 1275 ntBASIC22.69■■□□□ 1.22
CCDC40Q4G0X9 DUX4L5-201ENST00000630834 1275 ntBASIC22.69■■□□□ 1.22
CCDC40Q4G0X9 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC22.69■■□□□ 1.22
CCDC40Q4G0X9 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC22.69■■□□□ 1.22
CCDC40Q4G0X9 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC22.69■■□□□ 1.22
CCDC40Q4G0X9 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
CCDC40Q4G0X9 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC22.69■■□□□ 1.22
CCDC40Q4G0X9 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC22.69■■□□□ 1.22
CCDC40Q4G0X9 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC22.68■■□□□ 1.22
CCDC40Q4G0X9 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC22.68■■□□□ 1.22
CCDC40Q4G0X9 KRT16P2-201ENST00000414673 1423 ntBASIC22.68■■□□□ 1.22
CCDC40Q4G0X9 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
CCDC40Q4G0X9 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC22.68■■□□□ 1.22
CCDC40Q4G0X9 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC22.68■■□□□ 1.22
CCDC40Q4G0X9 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC22.68■■□□□ 1.22
CCDC40Q4G0X9 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC22.68■■□□□ 1.22
CCDC40Q4G0X9 TESC-206ENST00000541210 936 ntTSL 3 BASIC22.68■■□□□ 1.22
CCDC40Q4G0X9 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
CCDC40Q4G0X9 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC22.68■■□□□ 1.22
CCDC40Q4G0X9 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC22.68■■□□□ 1.22
CCDC40Q4G0X9 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC22.67■■□□□ 1.22
CCDC40Q4G0X9 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
CCDC40Q4G0X9 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC22.67■■□□□ 1.22
CCDC40Q4G0X9 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
CCDC40Q4G0X9 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
CCDC40Q4G0X9 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
CCDC40Q4G0X9 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
CCDC40Q4G0X9 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
CCDC40Q4G0X9 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
CCDC40Q4G0X9 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC22.67■■□□□ 1.22
CCDC40Q4G0X9 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC22.67■■□□□ 1.22
CCDC40Q4G0X9 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC22.67■■□□□ 1.22
CCDC40Q4G0X9 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC22.67■■□□□ 1.22
CCDC40Q4G0X9 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC22.67■■□□□ 1.22
CCDC40Q4G0X9 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC22.67■■□□□ 1.22
CCDC40Q4G0X9 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC22.67■■□□□ 1.22
CCDC40Q4G0X9 AP001160.3-201ENST00000601484 763 ntBASIC22.67■■□□□ 1.22
CCDC40Q4G0X9 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC22.67■■□□□ 1.22
CCDC40Q4G0X9 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC22.67■■□□□ 1.22
CCDC40Q4G0X9 LINC01006-201ENST00000333319 2292 ntBASIC22.67■■□□□ 1.22
CCDC40Q4G0X9 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
CCDC40Q4G0X9 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC22.67■■□□□ 1.22
CCDC40Q4G0X9 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC22.67■■□□□ 1.22
CCDC40Q4G0X9 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
CCDC40Q4G0X9 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC22.67■■□□□ 1.22
CCDC40Q4G0X9 LINC01521-201ENST00000504184 1943 ntBASIC22.67■■□□□ 1.22
CCDC40Q4G0X9 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC22.67■■□□□ 1.22
CCDC40Q4G0X9 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC22.66■■□□□ 1.22
CCDC40Q4G0X9 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
CCDC40Q4G0X9 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
CCDC40Q4G0X9 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC22.66■■□□□ 1.22
CCDC40Q4G0X9 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
CCDC40Q4G0X9 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
CCDC40Q4G0X9 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
CCDC40Q4G0X9 AC245052.3-201ENST00000450182 901 ntBASIC22.66■■□□□ 1.22
CCDC40Q4G0X9 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
CCDC40Q4G0X9 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
CCDC40Q4G0X9 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
CCDC40Q4G0X9 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
CCDC40Q4G0X9 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
CCDC40Q4G0X9 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
CCDC40Q4G0X9 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
CCDC40Q4G0X9 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC22.65■■□□□ 1.22
CCDC40Q4G0X9 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
CCDC40Q4G0X9 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CCDC40Q4G0X9 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CCDC40Q4G0X9 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CCDC40Q4G0X9 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
CCDC40Q4G0X9 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CCDC40Q4G0X9 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC22.65■■□□□ 1.22
CCDC40Q4G0X9 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC22.65■■□□□ 1.22
CCDC40Q4G0X9 SLC7A5P2-201ENST00000553010 536 ntBASIC22.65■■□□□ 1.22
CCDC40Q4G0X9 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC22.65■■□□□ 1.22
CCDC40Q4G0X9 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CCDC40Q4G0X9 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CCDC40Q4G0X9 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CCDC40Q4G0X9 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CCDC40Q4G0X9 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
CCDC40Q4G0X9 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
CCDC40Q4G0X9 AC004854.2-201ENST00000608450 1441 ntBASIC22.65■■□□□ 1.22
CCDC40Q4G0X9 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC22.65■■□□□ 1.22
CCDC40Q4G0X9 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
CCDC40Q4G0X9 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
CCDC40Q4G0X9 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC22.64■■□□□ 1.22
CCDC40Q4G0X9 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC22.64■■□□□ 1.22
CCDC40Q4G0X9 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
Retrieved 100 of 98,524 protein–RNA pairs in 59.9 ms