Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC25.54■■□□□ 1.68
CCDC88AQ3V6T2 TK2-213ENST00000563369 882 ntTSL 5 BASIC25.54■■□□□ 1.68
CCDC88AQ3V6T2 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
CCDC88AQ3V6T2 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC25.54■■□□□ 1.68
CCDC88AQ3V6T2 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC25.54■■□□□ 1.68
CCDC88AQ3V6T2 KRT17P2-201ENST00000300992 1314 ntBASIC25.54■■□□□ 1.68
CCDC88AQ3V6T2 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC25.54■■□□□ 1.68
CCDC88AQ3V6T2 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC25.54■■□□□ 1.68
CCDC88AQ3V6T2 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC25.54■■□□□ 1.68
CCDC88AQ3V6T2 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC25.54■■□□□ 1.68
CCDC88AQ3V6T2 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
CCDC88AQ3V6T2 AC133681.1-201ENST00000465482 601 ntBASIC25.53■■□□□ 1.68
CCDC88AQ3V6T2 MTDHP1-201ENST00000605323 784 ntBASIC25.53■■□□□ 1.68
CCDC88AQ3V6T2 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
CCDC88AQ3V6T2 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
CCDC88AQ3V6T2 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC25.53■■□□□ 1.68
CCDC88AQ3V6T2 AC003102.1-202ENST00000563394 1796 ntBASIC25.53■■□□□ 1.68
CCDC88AQ3V6T2 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
CCDC88AQ3V6T2 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
CCDC88AQ3V6T2 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC25.53■■□□□ 1.68
CCDC88AQ3V6T2 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC25.53■■□□□ 1.68
CCDC88AQ3V6T2 TSPY15P-201ENST00000457163 923 ntBASIC25.53■■□□□ 1.68
CCDC88AQ3V6T2 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC25.53■■□□□ 1.68
CCDC88AQ3V6T2 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC25.53■■□□□ 1.68
CCDC88AQ3V6T2 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
CCDC88AQ3V6T2 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
CCDC88AQ3V6T2 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
CCDC88AQ3V6T2 AC026471.6-201ENST00000622954 1905 ntBASIC25.52■■□□□ 1.68
CCDC88AQ3V6T2 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
CCDC88AQ3V6T2 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC25.52■■□□□ 1.68
CCDC88AQ3V6T2 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
CCDC88AQ3V6T2 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
CCDC88AQ3V6T2 VMO1-204ENST00000441199 741 ntTSL 2 BASIC25.52■■□□□ 1.68
CCDC88AQ3V6T2 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC25.52■■□□□ 1.68
CCDC88AQ3V6T2 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC25.52■■□□□ 1.68
CCDC88AQ3V6T2 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC25.52■■□□□ 1.68
CCDC88AQ3V6T2 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC25.52■■□□□ 1.68
CCDC88AQ3V6T2 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC25.52■■□□□ 1.68
CCDC88AQ3V6T2 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC25.51■■□□□ 1.68
CCDC88AQ3V6T2 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC25.51■■□□□ 1.67
CCDC88AQ3V6T2 C2orf69P4-201ENST00000565394 541 ntBASIC25.51■■□□□ 1.67
CCDC88AQ3V6T2 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC25.51■■□□□ 1.67
CCDC88AQ3V6T2 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
CCDC88AQ3V6T2 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC25.51■■□□□ 1.67
CCDC88AQ3V6T2 GCK-205ENST00000437084 1385 ntTSL 5 BASIC25.51■■□□□ 1.67
CCDC88AQ3V6T2 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
CCDC88AQ3V6T2 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC25.51■■□□□ 1.67
CCDC88AQ3V6T2 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
CCDC88AQ3V6T2 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC25.51■■□□□ 1.67
CCDC88AQ3V6T2 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
CCDC88AQ3V6T2 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC25.51■■□□□ 1.67
CCDC88AQ3V6T2 PENK-204ENST00000518770 863 ntTSL 2 BASIC25.51■■□□□ 1.67
CCDC88AQ3V6T2 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
CCDC88AQ3V6T2 AC097493.4-201ENST00000641197 219 ntBASIC25.51■■□□□ 1.67
CCDC88AQ3V6T2 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC25.51■■□□□ 1.67
CCDC88AQ3V6T2 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC25.5■■□□□ 1.67
CCDC88AQ3V6T2 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
CCDC88AQ3V6T2 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC25.5■■□□□ 1.67
CCDC88AQ3V6T2 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC25.5■■□□□ 1.67
CCDC88AQ3V6T2 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC25.5■■□□□ 1.67
CCDC88AQ3V6T2 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
CCDC88AQ3V6T2 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC25.5■■□□□ 1.67
CCDC88AQ3V6T2 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC25.5■■□□□ 1.67
CCDC88AQ3V6T2 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC25.5■■□□□ 1.67
CCDC88AQ3V6T2 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC25.5■■□□□ 1.67
CCDC88AQ3V6T2 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
CCDC88AQ3V6T2 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
CCDC88AQ3V6T2 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC25.5■■□□□ 1.67
CCDC88AQ3V6T2 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
CCDC88AQ3V6T2 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
CCDC88AQ3V6T2 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
CCDC88AQ3V6T2 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
CCDC88AQ3V6T2 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
CCDC88AQ3V6T2 TK2-204ENST00000525974 1178 ntTSL 2 BASIC25.49■■□□□ 1.67
CCDC88AQ3V6T2 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC25.49■■□□□ 1.67
CCDC88AQ3V6T2 AL589743.5-201ENST00000616611 1050 ntBASIC25.49■■□□□ 1.67
CCDC88AQ3V6T2 AC113410.3-201ENST00000623366 203 ntBASIC25.49■■□□□ 1.67
CCDC88AQ3V6T2 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC25.49■■□□□ 1.67
CCDC88AQ3V6T2 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC25.49■■□□□ 1.67
CCDC88AQ3V6T2 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
CCDC88AQ3V6T2 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC25.49■■□□□ 1.67
CCDC88AQ3V6T2 CDV3P1-201ENST00000471403 739 ntBASIC25.49■■□□□ 1.67
CCDC88AQ3V6T2 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC25.49■■□□□ 1.67
CCDC88AQ3V6T2 MIR4785-201ENST00000585005 73 ntBASIC25.49■■□□□ 1.67
CCDC88AQ3V6T2 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
CCDC88AQ3V6T2 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC25.48■■□□□ 1.67
CCDC88AQ3V6T2 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
CCDC88AQ3V6T2 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
CCDC88AQ3V6T2 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
CCDC88AQ3V6T2 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
CCDC88AQ3V6T2 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC25.48■■□□□ 1.67
CCDC88AQ3V6T2 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC25.48■■□□□ 1.67
CCDC88AQ3V6T2 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
CCDC88AQ3V6T2 TMPOP1-202ENST00000424642 1267 ntBASIC25.48■■□□□ 1.67
CCDC88AQ3V6T2 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC25.48■■□□□ 1.67
CCDC88AQ3V6T2 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC25.48■■□□□ 1.67
CCDC88AQ3V6T2 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC25.47■■□□□ 1.67
CCDC88AQ3V6T2 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
CCDC88AQ3V6T2 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC25.47■■□□□ 1.67
CCDC88AQ3V6T2 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms