Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
PKNOX1P55347 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
PKNOX1P55347 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PKNOX1P55347 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PKNOX1P55347 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
PKNOX1P55347 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PKNOX1P55347 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
PKNOX1P55347 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PKNOX1P55347 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
PKNOX1P55347 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PKNOX1P55347 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PKNOX1P55347 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC20.22■□□□□ 0.83
PKNOX1P55347 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PKNOX1P55347 MFF-207ENST00000409565 1548 ntTSL 2 BASIC20.22■□□□□ 0.83
PKNOX1P55347 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC20.22■□□□□ 0.83
PKNOX1P55347 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PKNOX1P55347 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
PKNOX1P55347 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PKNOX1P55347 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC20.22■□□□□ 0.83
PKNOX1P55347 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
PKNOX1P55347 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC20.22■□□□□ 0.83
PKNOX1P55347 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PKNOX1P55347 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC20.22■□□□□ 0.83
PKNOX1P55347 NALT1-201ENST00000429224 738 ntTSL 5 BASIC20.22■□□□□ 0.83
PKNOX1P55347 AL354811.1-201ENST00000610286 706 ntBASIC20.22■□□□□ 0.83
PKNOX1P55347 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC20.22■□□□□ 0.83
PKNOX1P55347 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC20.22■□□□□ 0.83
PKNOX1P55347 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PKNOX1P55347 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC20.22■□□□□ 0.83
PKNOX1P55347 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
PKNOX1P55347 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC20.22■□□□□ 0.83
PKNOX1P55347 AC073314.1-201ENST00000568729 2216 ntBASIC20.22■□□□□ 0.83
PKNOX1P55347 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
PKNOX1P55347 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PKNOX1P55347 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PKNOX1P55347 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC20.22■□□□□ 0.83
PKNOX1P55347 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PKNOX1P55347 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
PKNOX1P55347 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PKNOX1P55347 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
PKNOX1P55347 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PKNOX1P55347 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
PKNOX1P55347 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC20.21■□□□□ 0.83
PKNOX1P55347 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC20.21■□□□□ 0.83
PKNOX1P55347 AFG3L1P-217ENST00000557444 2447 ntBASIC20.21■□□□□ 0.83
PKNOX1P55347 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC20.21■□□□□ 0.83
PKNOX1P55347 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PKNOX1P55347 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PKNOX1P55347 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PKNOX1P55347 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PKNOX1P55347 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC20.21■□□□□ 0.83
PKNOX1P55347 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PKNOX1P55347 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PKNOX1P55347 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PKNOX1P55347 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PKNOX1P55347 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC20.21■□□□□ 0.83
PKNOX1P55347 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
PKNOX1P55347 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
PKNOX1P55347 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
PKNOX1P55347 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.2■□□□□ 0.82
PKNOX1P55347 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.2■□□□□ 0.82
PKNOX1P55347 SUDS3P1-201ENST00000505831 966 ntBASIC20.2■□□□□ 0.82
PKNOX1P55347 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PKNOX1P55347 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC20.2■□□□□ 0.82
PKNOX1P55347 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC20.2■□□□□ 0.82
PKNOX1P55347 TPRG1LP1-201ENST00000598702 760 ntBASIC20.2■□□□□ 0.82
PKNOX1P55347 CPT2-209ENST00000636935 803 ntTSL 5 BASIC20.2■□□□□ 0.82
PKNOX1P55347 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC20.2■□□□□ 0.82
PKNOX1P55347 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PKNOX1P55347 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
PKNOX1P55347 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
PKNOX1P55347 GABARAPL3-202ENST00000624044 1851 ntBASIC20.2■□□□□ 0.82
PKNOX1P55347 AP005212.1-201ENST00000581547 1997 ntBASIC20.19■□□□□ 0.82
PKNOX1P55347 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC20.19■□□□□ 0.82
PKNOX1P55347 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
PKNOX1P55347 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.19■□□□□ 0.82
PKNOX1P55347 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PKNOX1P55347 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PKNOX1P55347 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PKNOX1P55347 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC20.19■□□□□ 0.82
PKNOX1P55347 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC20.19■□□□□ 0.82
PKNOX1P55347 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC20.19■□□□□ 0.82
PKNOX1P55347 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.19■□□□□ 0.82
PKNOX1P55347 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC20.19■□□□□ 0.82
PKNOX1P55347 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC20.19■□□□□ 0.82
PKNOX1P55347 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
PKNOX1P55347 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
PKNOX1P55347 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC20.19■□□□□ 0.82
PKNOX1P55347 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PKNOX1P55347 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PKNOX1P55347 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PKNOX1P55347 AP004607.4-201ENST00000530158 1459 ntBASIC20.18■□□□□ 0.82
PKNOX1P55347 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PKNOX1P55347 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.18■□□□□ 0.82
PKNOX1P55347 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
PKNOX1P55347 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
PKNOX1P55347 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PKNOX1P55347 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PKNOX1P55347 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC20.18■□□□□ 0.82
PKNOX1P55347 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms