Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NEK3P51956 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC21.28■■□□□ 1
NEK3P51956 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.28■■□□□ 1
NEK3P51956 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC21.28■■□□□ 1
NEK3P51956 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NEK3P51956 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
NEK3P51956 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC21.28■■□□□ 1
NEK3P51956 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC21.28■■□□□ 1
NEK3P51956 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC21.28■■□□□ 1
NEK3P51956 TK2-208ENST00000545043 1120 ntTSL 2 BASIC21.28■■□□□ 1
NEK3P51956 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC21.28■■□□□ 1
NEK3P51956 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC21.28■■□□□ 1
NEK3P51956 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC21.27■■□□□ 1
NEK3P51956 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
NEK3P51956 NAA20-201ENST00000310450 920 ntTSL 2 BASIC21.27■■□□□ 1
NEK3P51956 ID1-201ENST00000376105 1233 ntBASIC21.27■■□□□ 1
NEK3P51956 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC21.27■■□□□ 1
NEK3P51956 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC21.27■■□□□ 1
NEK3P51956 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
NEK3P51956 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
NEK3P51956 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
NEK3P51956 AC008175.2-201ENST00000612840 297 ntBASIC21.27■■□□□ 1
NEK3P51956 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC21.27■■□□□ 1
NEK3P51956 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
NEK3P51956 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC21.27■■□□□ 1
NEK3P51956 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
NEK3P51956 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
NEK3P51956 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
NEK3P51956 DYM-203ENST00000442713 2147 ntTSL 2 BASIC21.26■□□□□ 0.99
NEK3P51956 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
NEK3P51956 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
NEK3P51956 AC003102.1-202ENST00000563394 1796 ntBASIC21.26■□□□□ 0.99
NEK3P51956 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NEK3P51956 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NEK3P51956 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC21.26■□□□□ 0.99
NEK3P51956 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
NEK3P51956 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
NEK3P51956 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NEK3P51956 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC21.26■□□□□ 0.99
NEK3P51956 AC006970.2-201ENST00000450065 779 ntBASIC21.26■□□□□ 0.99
NEK3P51956 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NEK3P51956 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC21.26■□□□□ 0.99
NEK3P51956 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC21.26■□□□□ 0.99
NEK3P51956 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
NEK3P51956 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC21.26■□□□□ 0.99
NEK3P51956 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NEK3P51956 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC21.26■□□□□ 0.99
NEK3P51956 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
NEK3P51956 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
NEK3P51956 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NEK3P51956 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC21.26■□□□□ 0.99
NEK3P51956 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NEK3P51956 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
NEK3P51956 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NEK3P51956 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
NEK3P51956 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
NEK3P51956 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
NEK3P51956 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC21.25■□□□□ 0.99
NEK3P51956 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NEK3P51956 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC21.25■□□□□ 0.99
NEK3P51956 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC21.25■□□□□ 0.99
NEK3P51956 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
NEK3P51956 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
NEK3P51956 DUX4L16-201ENST00000555130 1264 ntBASIC21.25■□□□□ 0.99
NEK3P51956 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC21.25■□□□□ 0.99
NEK3P51956 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC21.25■□□□□ 0.99
NEK3P51956 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
NEK3P51956 AC231657.2-201ENST00000624556 255 ntBASIC21.25■□□□□ 0.99
NEK3P51956 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC21.25■□□□□ 0.99
NEK3P51956 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC21.25■□□□□ 0.99
NEK3P51956 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
NEK3P51956 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NEK3P51956 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NEK3P51956 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NEK3P51956 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC21.24■□□□□ 0.99
NEK3P51956 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
NEK3P51956 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC21.24■□□□□ 0.99
NEK3P51956 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC21.24■□□□□ 0.99
NEK3P51956 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC21.24■□□□□ 0.99
NEK3P51956 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
NEK3P51956 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
NEK3P51956 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
NEK3P51956 CROCCP5-201ENST00000436658 830 ntBASIC21.24■□□□□ 0.99
NEK3P51956 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
NEK3P51956 SLC7A5P1-201ENST00000568957 537 ntBASIC21.24■□□□□ 0.99
NEK3P51956 AC120498.10-201ENST00000621827 505 ntBASIC21.24■□□□□ 0.99
NEK3P51956 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
NEK3P51956 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
NEK3P51956 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
NEK3P51956 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
NEK3P51956 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
NEK3P51956 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
NEK3P51956 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
NEK3P51956 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NEK3P51956 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NEK3P51956 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
NEK3P51956 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NEK3P51956 MIR663A-201ENST00000385250 93 ntBASIC21.23■□□□□ 0.99
NEK3P51956 POU5F1P4-201ENST00000413175 1085 ntBASIC21.23■□□□□ 0.99
NEK3P51956 PPP1R14BP3-201ENST00000509033 445 ntBASIC21.23■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms