Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
RFX3P48380 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RFX3P48380 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
RFX3P48380 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
RFX3P48380 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
RFX3P48380 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
RFX3P48380 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
RFX3P48380 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RFX3P48380 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RFX3P48380 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC19.36■□□□□ 0.69
RFX3P48380 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
RFX3P48380 AC026271.2-201ENST00000428091 497 ntBASIC19.36■□□□□ 0.69
RFX3P48380 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC19.36■□□□□ 0.69
RFX3P48380 AC138907.5-202ENST00000569484 235 ntBASIC19.36■□□□□ 0.69
RFX3P48380 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC19.36■□□□□ 0.69
RFX3P48380 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RFX3P48380 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC19.36■□□□□ 0.69
RFX3P48380 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RFX3P48380 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RFX3P48380 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.36■□□□□ 0.69
RFX3P48380 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
RFX3P48380 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
RFX3P48380 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
RFX3P48380 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC19.35■□□□□ 0.69
RFX3P48380 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RFX3P48380 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
RFX3P48380 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RFX3P48380 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
RFX3P48380 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC19.35■□□□□ 0.69
RFX3P48380 NAA20-201ENST00000310450 920 ntTSL 2 BASIC19.35■□□□□ 0.69
RFX3P48380 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RFX3P48380 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC19.35■□□□□ 0.69
RFX3P48380 AC010141.2-201ENST00000452426 721 ntBASIC19.35■□□□□ 0.69
RFX3P48380 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC19.35■□□□□ 0.69
RFX3P48380 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC19.35■□□□□ 0.69
RFX3P48380 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RFX3P48380 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.35■□□□□ 0.69
RFX3P48380 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC19.35■□□□□ 0.69
RFX3P48380 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
RFX3P48380 AC120498.10-201ENST00000621827 505 ntBASIC19.35■□□□□ 0.69
RFX3P48380 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC19.35■□□□□ 0.69
RFX3P48380 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RFX3P48380 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
RFX3P48380 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
RFX3P48380 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC19.35■□□□□ 0.69
RFX3P48380 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
RFX3P48380 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
RFX3P48380 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC19.34■□□□□ 0.69
RFX3P48380 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
RFX3P48380 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC19.34■□□□□ 0.69
RFX3P48380 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RFX3P48380 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
RFX3P48380 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
RFX3P48380 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC19.34■□□□□ 0.69
RFX3P48380 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RFX3P48380 GXYLT1P2-201ENST00000433312 1230 ntBASIC19.34■□□□□ 0.69
RFX3P48380 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
RFX3P48380 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
RFX3P48380 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RFX3P48380 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RFX3P48380 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC19.34■□□□□ 0.69
RFX3P48380 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC19.34■□□□□ 0.69
RFX3P48380 AL049796.1-201ENST00000565336 1766 ntBASIC19.34■□□□□ 0.69
RFX3P48380 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RFX3P48380 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RFX3P48380 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
RFX3P48380 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC19.34■□□□□ 0.69
RFX3P48380 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RFX3P48380 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC19.34■□□□□ 0.69
RFX3P48380 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
RFX3P48380 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
RFX3P48380 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
RFX3P48380 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC19.33■□□□□ 0.69
RFX3P48380 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
RFX3P48380 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
RFX3P48380 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
RFX3P48380 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
RFX3P48380 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC19.33■□□□□ 0.68
RFX3P48380 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC19.33■□□□□ 0.68
RFX3P48380 KRT19P1-201ENST00000405746 1186 ntBASIC19.33■□□□□ 0.68
RFX3P48380 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
RFX3P48380 POU5F1P4-201ENST00000413175 1085 ntBASIC19.33■□□□□ 0.68
RFX3P48380 KRT18P61-201ENST00000585825 1298 ntBASIC19.33■□□□□ 0.68
RFX3P48380 MIR5787-201ENST00000611784 55 ntBASIC19.33■□□□□ 0.68
RFX3P48380 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC19.33■□□□□ 0.68
RFX3P48380 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC19.33■□□□□ 0.68
RFX3P48380 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC19.33■□□□□ 0.68
RFX3P48380 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
RFX3P48380 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
RFX3P48380 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
RFX3P48380 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
RFX3P48380 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
RFX3P48380 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
RFX3P48380 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
RFX3P48380 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC19.32■□□□□ 0.68
RFX3P48380 SLC7A5P2-201ENST00000553010 536 ntBASIC19.32■□□□□ 0.68
RFX3P48380 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC19.32■□□□□ 0.68
RFX3P48380 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
RFX3P48380 ANKRD20A6P-201ENST00000618763 204 ntBASIC19.32■□□□□ 0.68
RFX3P48380 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms